Structure of PDB 7ymm Chain 13

Receptor sequence
>7ymm13 (length=344) Species: 329726 (Acaryochloris marina MBIC11017) [Search protein sequence]
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEV
SRFNPDLPVYQQNLVCIPQLARAGWGVAAGGAVVDTYPYFAIAMIHLVAA
AILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFL
GAACLLFATWACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYF
VNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVKSGEALLAYAL
AGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGG
HTTRFWISNFHYYWAFYCLQGHLFHALRSYGFDFRRIPRALASL
3D structure
PDB7ymm Structure of a large photosystem II supercomplex from Acaryochloris marina.
Chain13
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CL7 13 R72 A153 C154 F157 H211 V214 Y218 A256 F263 V270 F271 R72 A153 C154 F157 H211 V214 Y218 A256 F263 V270 F271
BS02 CL7 13 W41 Q69 A256 H311 W314 A315 C318 W41 Q69 A256 H311 W314 A315 C318
BS03 CL7 13 A42 C66 Q69 L70 H96 A42 C66 Q69 L70 H96
BS04 CL7 13 W41 F45 N63 L64 W306 F310 W314 W41 F45 N63 L64 W306 F310 W314
BS05 CL7 13 Y248 A251 F255 F258 H322 L323 A326 Y330 Y248 A251 F255 F258 H322 L323 A326 Y330
BS06 CL7 13 L143 L147 G221 W224 H225 K229 P230 W231 L143 L147 G221 W224 H225 K229 P230 W231
BS07 CL7 13 Q139 I142 L143 H146 F238 Y248 Q139 I142 L143 H146 F238 Y248
BS08 CL7 13 M1 W14 S15 N17 L246 L250 Y317 G321 F324 H325 M1 W14 S15 N17 L246 L250 Y317 G321 F324 H325
BS09 CL7 13 N17 F20 F27 H31 Q34 H146 L245 L246 A249 L253 N17 F20 F27 H31 Q34 H146 L245 L246 A249 L253
BS10 CL7 13 N17 Q34 M38 W41 W314 N17 Q34 M38 W41 W314
BS11 CL7 13 N17 R19 F20 A30 V111 N17 R19 F20 A30 V111
BS12 CL7 13 H31 N32 I35 F129 F131 I142 H145 H146 F149 H31 N32 I35 F129 F131 I142 H145 H146 F149
BS13 CL7 13 L28 G106 Y109 P115 F123 A126 F129 L28 G106 Y109 P115 F123 A126 F129
BS14 CL7 13 R128 H145 I226 R128 H145 I226
BS15 CL7 13 F186 F187 G190 P198 F213 F186 F187 G190 P198 F213
BS16 CL7 13 Y317 Q320 L323 Y317 Q320 L323
BS17 CL7 13 V286 T287 P288 Y312 V286 T287 P288 Y312
BS18 CL7 13 W191 A192 W191 A192
BS19 ZEX 13 W14 F305 N309 F310 W314 W14 F305 N309 F310 W314
BS20 ZEX 13 V207 H211 V214 V207 H211 V214
BS21 ZEX 13 M94 V98 I102 F129 M94 V98 I102 F129
BS22 ZEX 13 M94 A101 L108 V111 M94 A101 L108 V111
BS23 ZEX 13 Y262 P288 Y262 P288
BS24 CL7 13 F332 R336 I337 F332 R336 I337
BS25 CL7 13 A105 Y109 K113 A105 Y109 K113
BS26 CL7 13 F40 S44 F40 S44
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009521 photosystem
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ymm, PDBe:7ymm, PDBj:7ymm
PDBsum7ymm
PubMed38394197
UniProtB0C6I0

[Back to BioLiP]