Structure of PDB 6jlu Chain 10
Receptor sequence
>6jlu10 (length=178) [
Search protein sequence
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AFEDELGAQPPLGFFDPLGLVAAAAAAADGDQEKFDRLRYVEIKHGRISM
LAVVGYLVQEAGVRLPGTIDYSGKTFAEIPNGFAAFKEIPAGGLVQLLFF
IGVLESSVMRDLTAAAAAAAAAAAAAAATFDEETQFKKRAIELNQGRAAQ
MGILALMVHEQLGVSLLPAAAAAAAAAA
3D structure
PDB
6jlu
The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Chain
10
Resolution
3.02 Å
3D
structure
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Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
A86
10
L37 N169 M176
L12 N144 M151
BS02
A86
10
R72 I73 L76 Y96
R47 I48 L51 Y71
BS03
A86
10
F40 I73 S74 A77 Q84 F111 Q175 L179
F15 I48 S49 A52 Q59 F86 Q150 L154
BS04
A86
10
M75 V78 V79 X144 X146 X148 Q170 A173 H184
M50 V53 V54 X119 X121 X123 Q145 A148 H159
BS05
A86
10
X52 E58 Q186
X27 E33 Q161
BS06
CLA
10
D56 Q57
D31 Q32
BS07
CLA
10
Q34 P35 P36 I166 N169
Q9 P10 P11 I141 N144
BS08
CLA
10
F39 F40 F60 L63 E67 R172 Q175
F14 F15 F35 L38 E42 R147 Q150
BS09
KC2
10
R62 L63 V66 H70 L179
R37 L38 V41 H45 L154
BS10
CLA
10
G80 V83 Q84 R89 L90 F101 A110
G55 V58 Q59 R64 L65 F76 A85
BS11
CLA
10
D95 Y96 P115 G118 Q121 F125
D70 Y71 P90 G93 Q96 F100
BS12
CLA
10
V66 K69 H70 I73 L123 E130 D136
V41 K44 H45 I48 L98 E105 D111
BS13
CLA
10
F27 R72 M75 X141 X142 X143 X144 X145 T154 Q160 K163 R164 E167 Q170
F2 R47 M50 X116 X117 X118 X119 X120 T129 Q135 K138 R139 E142 Q145
BS14
KC1
10
V79 Q170
V54 Q145
BS15
CLA
10
M176 A180 V183 H184 L187 X200
M151 A155 V158 H159 L162 X175
BS16
CLA
10
X147 X148 F155
X122 X123 F130
BS17
A86
10
L119 V120 L123 F124 V128 S132 R135
L94 V95 L98 F99 V103 S107 R110
External links
PDB
RCSB:6jlu
,
PDBe:6jlu
,
PDBj:6jlu
PDBsum
6jlu
PubMed
31371578
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