Structure of PDB 8ipx Chain 1

Receptor sequence
>8ipx1 (length=230) Species: 9606 (Homo sapiens) [Search protein sequence]
LVPENLLKKRKAYQALKATQAKQALLAKKEQKLRFKRLESFLHDSWRQKR
DKVRLRRLEVKPHALPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIF
SGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIP
LTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARH
ATKNRVGFLKEMGTPGYRGERINQLIRQLN
3D structure
PDB8ipx Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.
Chain1
Resolution4.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 1 Q39 Q42 L44 K47 K48 Q50 K51 A223 R224 H225 Q20 Q23 L25 K28 K29 Q31 K32 A198 R199 H200
BS02 rna 1 W69 R79 W46 R56
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001825 blastocyst formation
Cellular Component
GO:0005730 nucleolus
GO:0005739 mitochondrion
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:8ipx, PDBe:8ipx, PDBj:8ipx
PDBsum8ipx
PubMed37491604
UniProtQ6DKI1|RL7L_HUMAN Ribosomal protein uL30-like (Gene Name=RPL7L1)

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