Structure of PDB 8ifc Chain 1

Receptor sequence
>8ifc1 (length=46) Species: 562 (Escherichia coli) [Search protein sequence]
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
3D structure
PDB8ifc Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside.
Chain1
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 1 M1 K2 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 H16 F18 R19 R21 K25 N26 V30 R33 R34 R35 K37 G38 R39 A40 S45 K46 M1 K2 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 H16 F18 R19 R21 K25 N26 V30 R33 R34 R35 K37 G38 R39 A40 S45 K46
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ifc, PDBe:8ifc, PDBj:8ifc
PDBsum8ifc
PubMed38227611
UniProtP0A7P5|RL34_ECOLI Large ribosomal subunit protein bL34 (Gene Name=rpmH)

[Back to BioLiP]