Structure of PDB 8cgd Chain 1

Receptor sequence
>8cgd1 (length=45) Species: 679895 (Escherichia coli BW25113) [Search protein sequence]
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS
3D structure
PDB8cgd Structural conservation of antibiotic interaction with ribosomes.
Chain1
Resolution1.98 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 1 M1 K2 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 S15 H16 G17 F18 R19 R21 M22 K25 N26 Q29 R33 R34 R35 K37 G38 R39 A40 R41 S45 M1 K2 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 S15 H16 G17 F18 R19 R21 M22 K25 N26 Q29 R33 R34 R35 K37 G38 R39 A40 R41 S45
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8cgd, PDBe:8cgd, PDBj:8cgd
PDBsum8cgd
PubMed37550453
UniProtP0A7P5|RL34_ECOLI Large ribosomal subunit protein bL34 (Gene Name=rpmH)

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