Structure of PDB 8bd3 Chain 1

Receptor sequence

>8bd31 (length=214) Species: 2649997 (Chlorella ohadii) [Search protein sequence]

SQWYGPDRPKFLGPYSTNFVPSYLTGEFPGDYGWDTSGLSADPATFARYR
EIEVIHARWAMLGALGCVVPELLDGTNHIAWFKAGAEIFGDDGIQYLGIP
GLINAKSIVATLIVQVVLMSYVEGYRVNGGPAGTGLDAVYPGGNFDPLGL
ADDPDTLAELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPIKNLNDHLADA
SANNFYALYAKNLA

3D structure

PDB

8bd3 Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress.

Chain

Resolution

2.73 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CHL	1	K48 F49 L50 G51 P52 Y70 W72	K10 F11 L12 G13 P14 Y32 W34
BS02	CLA	1	G68 D69 Y70 G71 W72 L77 S78 Y87 R88 E91 R207 M210 F214	G30 D31 Y32 G33 W34 L39 S40 Y49 R50 E53 R169 M172 F176
BS03	CLA	1	Y87 I90 H94 F217	Y49 I52 H56 F179
BS04	CLA	1	W97 L100 G104 V107 P108 Y134 L135 L140	W59 L62 G66 V69 P70 Y96 L97 L102
BS05	CHL	1	L140 I141 N142 A143 S145 A148 T149	L102 I103 N104 A105 S107 A110 T111
BS06	CHL	1	W97 G123 I132 Y134 I141 V152 Q153 M157	W59 G85 I94 Y96 I103 V114 Q115 M119
BS07	CHL	1	W119 F120 G123 A124 F127 I146 Q153 F217	W81 F82 G85 A86 F89 I108 Q115 F179
BS08	CHL	1	R96 W97 V160 Y163 R164 G168 P169 A170 G171 P179 F183	R58 W59 V122 Y125 R126 G130 P131 A132 G133 P141 F145
BS09	CHL	1	E89 I93 H94 W97 Q153 M157 S158 E161 R164 F214	E51 I55 H56 W59 Q115 M119 S120 E123 R126 F176
BS10	CLA	1	R96 M99 L100 L103 Y178 P179 G180 F183 D184 L188 L198 E202 N205	R58 M61 L62 L65 Y140 P141 G142 F145 D146 L150 L160 E164 N167
BS11	CLA	1	W41 K201 K204 N205	W3 K163 K166 N167
BS12	CLA	1	K201 N205 L208	K163 N167 L170
BS13	CLA	1	F214 G215 I218 Q219 V222 T223 N230 L231 H234 N242 F243 Y247	F176 G177 I180 Q181 V184 T185 N192 L193 H196 N204 F205 Y209
BS14	CLA	1	H234 A238	H196 A200
BS15	CHL	1	F243 Y244 A248 K249 L251 A252	F205 Y206 A210 K211 L213 A214
BS16	CLA	1	L251 A252	L213 A214
BS17	CLA	1	S75 L77	S37 L39
BS18	CHL	1	L50 T74	L12 T36

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8bd3, PDBe:8bd3, PDBj:8bd3
PDBsum	8bd3
PubMed	37566050
UniProt	A0A2P6TPU9

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