Structure of PDB 7ymi Chain 1

Receptor sequence
>7ymi1 (length=329) Species: 329726 (Acaryochloris marina MBIC11017) [Search protein sequence]
EYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSL
PMFDQGLVLIPHLAALGFGVGSGGVVTNTFVFTQIGAIHMVSSFVLFGGA
YFHAKIGPSVLATDQFAFSWDDPKKLGYILGHHLVLIGTGALLFVLWIKF
HGIYDPTIGEVRTVGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVD
IAGGIFHINVAPLPWSKVVNKYTYSPDGLLGTAIGGLALMGFISAYFCAV
NTLVYPVEFFGPALEVKFGIAPYFKDTADLADGFYTSRAWLANITYYLAF
YMLQGHLYHTLKAMGFKFEDIPAVIARDT
3D structure
PDB7ymi Structure of a large photosystem II supercomplex from Acaryochloris marina.
Chain1
Resolution3.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZEX 1 F196 Y268 F174 Y246
BS02 ZEX 1 F264 Y268 F296 Y318 F242 Y246 F274 Y296
BS03 CL7 1 F159 L211 H215 I218 M262 S266 V276 Y277 F144 L189 H193 I196 M240 S244 V254 Y255
BS04 CL7 1 W43 H71 L158 S266 Y277 L313 W34 H62 L143 S244 Y255 L291
BS05 CL7 1 I40 V41 V44 L68 H71 L72 L75 H98 M262 I31 V32 V35 L59 H62 L63 L66 H89 M240
BS06 CL7 1 W43 G65 V67 W312 W34 G56 V58 W290
BS07 CL7 1 G250 G257 L261 L325 H328 L329 T332 M336 G228 G235 L239 L303 H306 L307 T310 M314
BS08 CL7 1 L145 L149 G225 F228 H229 P234 L235 W237 S238 L130 L134 G203 F206 H207 P212 L213 W215 S216
BS09 CL7 1 L141 L145 H148 I152 Y246 L251 M262 L126 L130 H133 I137 Y224 L229 M240
BS10 CL7 1 S15 L252 I256 M324 G327 Y330 H331 K334 S6 L230 I234 M302 G305 Y308 H309 K312
BS11 CL7 1 N17 E21 W29 H33 H148 L251 L252 A255 L259 N8 E12 W20 H24 H133 L229 L230 A233 L237
BS12 CL7 1 Q36 I40 Q27 I31
BS13 CL7 1 N17 R19 L20 K28 A32 N8 R10 L11 K19 A23
BS14 CL7 1 H33 I34 I37 F131 F133 Y143 I144 H147 H148 L151 H24 I25 I28 F116 F118 Y128 I129 H132 H133 L136
BS15 CL7 1 V104 G108 H112 P117 T128 F131 V95 G99 H103 P108 T113 F116
BS16 CL7 1 Q130 F131 Y143 H147 Q115 F116 Y128 H132
BS17 CL7 1 V190 L191 G194 V168 L169 G172
BS18 CL7 1 Y323 Q326 L329 F340 Y301 Q304 L307 F318
BS19 CL7 1 F290 I292 A293 P294 Y318 F322 F268 I270 A271 P272 Y296 F300
BS20 CL7 1 W43 L46 N47 S50 W34 L37 N38 S41
BS21 CL7 1 W195 F196 W173 F174
BS22 ZEX 1 N315 Y323 N293 Y301
BS23 ZEX 1 C202 V205 I218 C180 V183 I196
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009521 photosystem
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ymi, PDBe:7ymi, PDBj:7ymi
PDBsum7ymi
PubMed38394197
UniProtB0C576

[Back to BioLiP]