Structure of PDB 7nso Chain 1

Receptor sequence

>7nso1 (length=50) Species: 562 (Escherichia coli)

GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK

3D structure

• PDB: 7nso Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics.
• Chain: 1
• Resolution: 2.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	1	G4 I5 R6 F20 Y21 T23 N26 K30 L36 K38 F39 R44 Q45 H46	G1 I2 R3 F17 Y18 T20 N23 K27 L33 K35 F36 R41 Q42 H43

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 02:17:41 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7nso', asym_id = '1', title = 'Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7nso', asym_id='1', title='Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7nso', asym_id = '1'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7nso', asym_id='1')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>