Structure of PDB 6rfr Chain 1

Receptor sequence
>6rfr1 (length=340) Species: 4952 (Yarrowia lipolytica) [Search protein sequence]
MIINIVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQA
FADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLG
ELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELIL
TSIFIIIIMFVSSLNITTIIETQRVVWYCIPLLPLLLIFFIASVAETARP
PFDLTESESELVAGYFTEYSGSPFVFFFLAEYSNIILISAFNGYLLLGGY
LSFNYSYLFNILFNDYSYVSFLFEGLINSSAYAIKLVFLMFSFIWVRAAF
PRFTYDNLINFCWIILLPLLFGIFLIIPSTLYIFDSFPTL
3D structure
PDB6rfr High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease.
Chain1
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 7.1.1.2: NADH:ubiquinone reductase (H(+)-translocating).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 UQ9 1 L16 F17 A20 A50 D53 A54 F228 L16 F17 A20 A50 D53 A54 F228
Gene Ontology
Molecular Function
GO:0003954 NADH dehydrogenase activity
GO:0008137 NADH dehydrogenase (ubiquinone) activity
Biological Process
GO:0009060 aerobic respiration
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0045271 respiratory chain complex I

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Cellular Component
External links
PDB RCSB:6rfr, PDBe:6rfr, PDBj:6rfr
PDBsum6rfr
PubMed31844670
UniProtQ9B6E8|NU1M_YARLI NADH-ubiquinone oxidoreductase chain 1 (Gene Name=ND1)

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