Structure of PDB 5oy0 Chain 1

Receptor sequence
>5oy01 (length=744) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence]
REAKAKVSVDNNPVPTSFEKWGKPGHFDRTLARGPKTTTWIWNLHANAHD
FDSQTSDLEDVSRKIFSAHFGHLAVVFVWLSGMYFHGAKFSNYEGWLADP
THIKPSAQVVWPIVGQGILNGDVGGGFHGIQITSGLFYLWRASGFTDSYQ
LYCTAIGGLVMAALMLFAGWFHYHVKAPKLEWFQNVESMMNHHLAGLLGL
GSLGWAGHQIHVSMPINKLLDAGVAPKDIPLPHEFILEPSKMAELYPSFA
QGLTPFFTLNWGVYSDFLTFKGGLNPVTGGLWLSDTAHHHLAIAVLFIIA
GHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGLYEILTTSWHAQLAINLA
LLGSLTIIVAQHMYAMPPYPYQAIDYATQLSLFTHHMWIGGFLIVGAGAH
GAIFMVRDYDPAKNVNNLLDRMLRHRDAIISHLNWVCIFLGFHSFGLYIH
NDTMRALGRPQDMFSDTAIQLQPIFAQWVQHLHTLAPGATAPNALATASY
AFGGETIAVAGKVAMMPITLGTADFMVHHIHAFTIHVTALILLKGVLYAR
SSRLVPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNSLSIVIF
HFSWKMQSDVWGTVSPDGSVTHVTLGNFAQSAITINGWLRDFLWAQAANV
INSYGSALSAYGIMFLAGHFVFAFSLMFLFSGRGYWQELIESIVWAHNKL
NVAPAIQPRALSIIQGRAVGVAHYLLGGIVTTWAFFLARSLSIG
3D structure
PDB5oy0 Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis.
Chain1
Resolution2.501 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA 1 Y455 I537 Y599 N600 I604 F607 I642 W645 L650 F672 H676 F679 Y731 T738 T739 F742 Y448 I530 Y592 N593 I597 F600 I635 W638 L643 F665 H669 F672 Y724 T731 T732 F735
BS02 CLA 1 F677 A680 F681 M684 Y692 W693 L696 F670 A673 F674 M677 Y685 W686 L689
BS03 CLA 1 F34 A55 H56 L173 F27 A48 H49 L166
BS04 CLA 1 H56 I72 A75 H76 H79 L80 V83 F84 W348 H349 Q351 L352 H49 I65 A68 H69 H72 L73 V76 F77 W341 H342 Q344 L345
BS05 CLA 1 H56 H79 V83 W86 L400 H49 H72 V76 W79 L393
BS06 CLA 1 G89 F92 H93 F97 W118 G82 F85 H86 F90 W111
BS07 CLA 1 W86 M90 Q115 I139 T140 S141 Y668 W79 M83 Q108 I132 T133 S134 Y661
BS08 CLA 1 Q115 V117 W118 Q123 A667 I670 Q108 V110 W111 Q116 A660 I663
BS09 CLA 1 R8 F73 A175 F178 H179 K183 W189 R1 F66 A168 F171 H172 K176 W182
BS10 CLA 1 S24 F25 W28 H33 K71 S74 V82 L173 G176 W177 Y180 H181 S17 F18 W21 H26 K64 S67 V75 L166 G169 W170 Y173 H174
BS11 CLA 1 A12 K13 W189 H199 T313 N314 A5 K6 W182 H192 T306 N307
BS12 CLA 1 F73 H76 L80 F84 M172 W189 F190 M196 H199 H200 L204 F66 H69 L73 F77 M165 W182 F183 M189 H192 H193 L197
BS13 CLA 1 F152 Q157 C160 T161 G211 W212 H215 V219 P239 F145 Q150 C153 T154 G204 W205 H208 V212 P232
BS14 CLA 1 L210 G214 I217 H218 F256 L203 G207 I210 H211 F249
BS15 CLA 1 Y156 C160 H240 L244 Y149 C153 H233 L237
BS16 CLA 1 W268 Y271 F277 H295 L298 V302 N500 W261 Y264 F270 H288 L291 V295 N493
BS17 CLA 1 F277 G279 L288 D292 H296 I300 H369 M373 A505 F270 G272 L281 D285 H289 I293 H362 M366 A498
BS18 CLA 1 G208 W212 H296 H297 F304 L362 V366 M370 P375 Y376 G201 W205 H289 H290 F297 L355 V359 M363 P368 Y369
BS19 CLA 1 N198 H199 A202 L207 H309 T313 W315 I317 N191 H192 A195 L200 H302 T306 W308 I310
BS20 CLA 1 M197 L201 L303 F304 A307 M310 Y311 I324 M429 M190 L194 L296 F297 A300 M303 Y304 I317 M422
BS21 CLA 1 I306 M310 G318 H319 I299 M303 G311 H312
BS22 CLA 1 H319 I324 H328 H312 I317 H321
BS23 CLA 1 L325 H337 L425 M429 L318 H330 L418 M422
BS24 CLA 1 V193 M196 M197 H200 M321 L344 T345 S347 W348 Q351 I354 N355 V186 M189 M190 H193 M314 L337 T338 S340 W341 Q344 I347 N348
BS25 CLA 1 I364 I365 Q368 I401 I542 I357 I358 Q361 I394 I535
BS26 CLA 1 L358 I365 H369 A372 M373 F509 L351 I358 H362 A365 M366 F502
BS27 CLA 1 W86 T140 S141 S388 T391 H392 W395 I736 W740 W79 T133 S134 S381 T384 H385 W388 I729 W733
BS28 CLA 1 L146 T363 Y376 L389 H392 H393 L139 T356 Y369 L382 H385 H386
BS29 CLA 1 H52 A53 H56 D57 L352 L356 F399 G403 A406 H407 I410 R414 R571 W588 H45 A46 H49 D50 L345 L349 F392 G396 A399 H400 I403 R407 R564 W581
BS30 CLA 1 F332 T333 R428 M429 H432 H439 F325 T326 R421 M422 H425 H432
BS31 CLA 1 W442 F446 F449 H450 W435 F439 F442 H443
BS32 CLA 1 F449 L454 I456 H457 M461 R466 D469 F471 F442 L447 I449 H450 M454 R459 D462 F464
BS33 CLA 1 L489 H490 A493 T497 L482 H483 A486 T490
BS34 CLA 1 T497 P499 N500 T490 P492 N493
BS35 CLA 1 Q368 Y371 F482 W485 V486 Q487 F509 I525 H535 H538 H608 F609 K612 Q361 Y364 F475 W478 V479 Q480 F502 I518 H528 H531 H601 F602 K605
BS36 CLA 1 F446 L447 P480 F482 A483 F532 H535 H536 F439 L440 P473 F475 A476 F525 H528 H529
BS37 CLA 1 L440 V443 H543 L433 V436 H536
BS38 CLA 1 I700 H704 V709 I693 H697 V702
BS39 CLA 1 W49 F681 L718 V726 H730 W42 F674 L711 V719 H723
BS40 CLA 1 P331 F332 P324 F325
BS41 PQN 1 M684 F685 S688 R690 W693 A717 L718 M677 F678 S681 R683 W686 A710 L711
BS42 SF4 1 C574 G576 P577 C583 C567 G569 P570 C576
BS43 CLA 1 H439 W442 H432 W435
BS44 CLA 1 T45 I48 W49 I700 H704 V709 P711 P715 T38 I41 W42 I693 H697 V702 P704 P708
BS45 CLA 1 W49 H52 W42 H45
BS46 CLA 1 I670 L673 A674 H676 F677 F679 A680 I663 L666 A667 H669 F670 F672 A673
BS47 CLA 1 F452 I456 F540 W597 N600 I642 F445 I449 F533 W590 N593 I635
BS48 CLA 1 N441 W442 I445 N434 W435 I438
BS49 CLA 1 L646 W651 L639 W644
BS50 CLA 1 N441 I445 F540 I548 F596 W597 N434 I438 F533 I541 F589 W590
BS51 CLA 1 T460 A463 L464 T453 A456 L457
BS52 CLA 1 K706 L707 K699 L700
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0005886 plasma membrane
GO:0009522 photosystem I
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5oy0, PDBe:5oy0, PDBj:5oy0
PDBsum5oy0
PubMed29414678
UniProtP29254|PSAA_SYNY3 Photosystem I P700 chlorophyll a apoprotein A1 (Gene Name=psaA)

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