Structure of PDB 5afi Chain 1

Receptor sequence
>5afi1 (length=50) Species: 562 (Escherichia coli) [Search protein sequence]
GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK
3D structure
PDB5afi Structure of the E. coli ribosome-EF-Tu complex at <3 angstrom resolution by Cs-corrected cryo-EM.
Chain1
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 1 G3 R5 F19 Y20 T22 N25 K29 L33 L35 F38 R43 Q44 H45 G1 R3 F17 Y18 T20 N23 K27 L31 L33 F36 R41 Q42 H43
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0046677 response to antibiotic
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5afi, PDBe:5afi, PDBj:5afi
PDBsum5afi
PubMed25707802
UniProtP0A7N9|RL33_ECOLI Large ribosomal subunit protein bL33 (Gene Name=rpmG)

[Back to BioLiP]