Structure of PDB 8d8l Chain 0

Receptor sequence

>8d8l0 (length=447) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

ELRLLSKTLQGQSYRDQLELNPDVSKAINNNIMAVHIPNNLRRVATNYYK
EIQEPNSLHRPCRTKMEVDAHIASIFLQNYGSIFQSLKELQKRVGPDNFK
PQRILDVGYGPATGIVALNDILGPNYRPDLKDAVILGNAEMQERAKIILS
RQLIMTNLRSSIPASKEYDLIILTHQLLHDGNQFPIQVDENIEHYLNILA
PGGHIVIIERGNPMGFEIIARARQITLRPENFPDEFGKIPRPWNYFLKVI
APCPHQRKCPLQVGNPNFYTHKEGKDLKFCNFQKSIKRPKFSIELKKGKL
LATSWDNGRDYEILNYSYLIFERSHKDENTLKEIKKLRNENVNGKYDIGS
LGDDTQNSWPRIINDPVKRKGHVMMDLCAPSGELEKWTVSRSFSKQIYHD
ARKSKKGDLWASAAKTQIKGLGDLNVKKFQLKKEERQKARKAMESYN

3D structure

PDB

8d8l Principles of mitoribosomal small subunit assembly in eukaryotes.

Chain

Resolution

2.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

2.1.1.-

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	0	Y109 Q113 R123 I135 Q138 H280 D281 Q284 I287 Q288 R311 N313 P314 T390 H391 K392 K395 K398 R408 K416 K419 L421 T423 S424 W425 N442 G443 R444 D445 Y446 N450 I498 N499 D500 R504 K505 H507 M509 D511 K521 R526 R537 K538 L575 K576 K577 R580 Q581 R584 K585	Y49 Q53 R63 I75 Q78 H179 D180 Q183 I186 Q187 R210 N212 P213 T270 H271 K272 K275 K278 R288 K296 K299 L301 T303 S304 W305 N307 G308 R309 D310 Y311 N315 I363 N364 D365 R369 K370 H372 M374 D376 K386 R391 R402 K403 L431 K432 K433 R436 Q437 R440 K441
BS02	SF4	0	P372 C373 H375 C379 P380 C400 C513	P252 C253 H255 C259 P260 C280 C378

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0008168	methyltransferase activity
GO:0046872	metal ion binding
GO:0051536	iron-sulfur cluster binding
GO:0051539	4 iron, 4 sulfur cluster binding

	Biological Process
GO:0006412	translation
GO:0032543	mitochondrial translation
GO:0180026	mitochondrial small ribosomal subunit assembly

	Cellular Component
GO:0005739	mitochondrion
GO:0005763	mitochondrial small ribosomal subunit

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8d8l, PDBe:8d8l, PDBj:8d8l
PDBsum	8d8l
PubMed	36482135
UniProt	P36056\|RT22_YEAST Ribosome assembly protein RSM22, mitochondrial (Gene Name=RSM22)

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