Structure of PDB 6o9k Chain 0

Receptor sequence
>6o9k0 (length=79) Species: 562 (Escherichia coli) [Search protein sequence]
GGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRD
HTLFAKADGKVKFEVKGPKNRKFISIEAE
3D structure
PDB6o9k Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Chain0
Resolution4.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 0 S8 R10 N11 R13 D14 S15 K18 R19 V22 S29 V30 L31 A32 R38 Q39 R40 K43 G53 R54 D55 T57 F59 F68 K74 R76 K77 S3 R5 N6 R8 D9 S10 K13 R14 V17 S24 V25 L26 A27 R33 Q34 R35 K38 G48 R49 D50 T52 F54 F63 K69 R71 K72
BS02 rna 0 K71 G72 P73 N75 K66 G67 P68 N70
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0043022 ribosome binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0001558 regulation of cell growth
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042256 cytosolic ribosome assembly
GO:0090070 positive regulation of ribosome biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o9k, PDBe:6o9k, PDBj:6o9k
PDBsum6o9k
PubMed31108498
UniProtP0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)

[Back to BioLiP]