Structure of PDB 6jlu Chain 0
Receptor sequence
>6jlu0 (length=178) [
Search protein sequence
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AFEDELGAQPPLGFFDPLGLVAAAAAAADGDQEKFDRLRYVEIKHGRISM
LAVVGYLVQEAGVRLPGTIDYSGKTFAEIPNGFAAFKEIPAGGLVQLLFF
IGVLESSVMRDLTAAAAAAAAAAAAAAATFDEETQFKKRAIELNQGRAAQ
MGILALMVHEQLGVSLLPAAAAAAAAAA
3D structure
PDB
6jlu
The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Chain
0
Resolution
3.02 Å
3D
structure
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Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
CLA
0
X147 X148
X122 X123
BS02
A86
0
N169 M176
N144 M151
BS03
A86
0
K69 R72 I73 L76 Y96 M134 R135
K44 R47 I48 L51 Y71 M109 R110
BS04
A86
0
F40 S74 A77 Q84 G107 F111 Q175 L179
F15 S49 A52 Q59 G82 F86 Q150 L154
BS05
A86
0
M75 V78 V79 X148 Q170 A173 G177 H184
M50 V53 V54 X123 Q145 A148 G152 H159
BS06
A86
0
X52 Q57 Q186
X27 Q32 Q161
BS07
CLA
0
D56 Q57
D31 Q32
BS08
CLA
0
Q34 P35 P36 K162 I166 N169
Q9 P10 P11 K137 I141 N144
BS09
CLA
0
L37 F40 F60 L63 R64 E67 R172 Q175
L12 F15 F35 L38 R39 E42 R147 Q150
BS10
KC2
0
R62 L63 V66 H70 L179
R37 L38 V41 H45 L154
BS11
CLA
0
A77 G80 Q84 V88 R89 L90 F101
A52 G55 Q59 V63 R64 L65 F76
BS12
CLA
0
D95 Y96 P115 G118 Q121 F125
D70 Y71 P90 G93 Q96 F100
BS13
CLA
0
V66 K69 H70 I73 L123 E130
V41 K44 H45 I48 L98 E105
BS14
CLA
0
R72 M75 X141 X142 X143 X144 X145 T154 K163 R164 E167 Q170
R47 M50 X116 X117 X118 X119 X120 T129 K138 R139 E142 Q145
BS15
KC1
0
V79 K163 Q170
V54 K138 Q145
BS16
CLA
0
M176 A180 V183 H184 L187 X200
M151 A155 V158 H159 L162 X175
BS17
A86
0
L119 V120 L123 F124 G127 V128 S132
L94 V95 L98 F99 G102 V103 S107
External links
PDB
RCSB:6jlu
,
PDBe:6jlu
,
PDBj:6jlu
PDBsum
6jlu
PubMed
31371578
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