Structure of PDB 6sl5 Chain A Binding Site BS44

Receptor Information
>6sl5 Chain A (length=740) Species: 3046 (Dunaliella salina) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVKIAVDRNPVETNFEKWAKPGHFSRALAKGPNTTTWIWNLHADAHDFDN
HTSDLEEISRKVFSAHFGQLGIILIWLSGMYFHGARFSNYEGWLSDPTHI
KPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITSELQLYS
TAIGGLVLAAACFFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSL
AWAGHQIHVSLPVNKLLDAGVDPKEIPLPHEFLLNQSIIADLYPSFSKGL
APFFTLNWAEYSDFLTFKGGLNPVTGGLWLSDTAHHHLAIAVLFLVAGHQ
YRTNWGIGHSIKDILESHKGPFTGNGHAGLYEILTTSWHAQLAINLALFG
SLSIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFCVVGAGAHAAI
FMVRDYDPTNNYNNLLDRVIRHRDAIISHLNWVSIFLGFHSFGLYIHNDT
MSALGRPQDMFSDTAIQLQPVFAQWIQNTHFTAPQLTAPNALAATSLTWG
GDVVAVGGKVAMMPIALGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSR
LIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFS
WKMQSDVWGTVTDSGVSHITGGNFAQSANTINGWLRDFLWAQSSQVIQSY
GSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLRVAP
SIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIIAVG
Ligand information
Ligand IDPQN
InChIInChI=1S/C31H46O2/c1-22(2)12-9-13-23(3)14-10-15-24(4)16-11-17-25(5)20-21-27-26(6)30(32)28-18-7-8-19-29(28)31(27)33/h7-8,18-20,22-24H,9-17,21H2,1-6H3/b25-20+/t23-,24-/m1/s1
InChIKeyMBWXNTAXLNYFJB-NKFFZRIASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1=C(C(=O)c2ccccc2C1=O)CC=C(C)CCCC(C)CCCC(C)CCCC(C)C
ACDLabs 10.04O=C2c1c(cccc1)C(=O)C(=C2C)C\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C
OpenEye OEToolkits 1.5.0CC1=C(C(=O)c2ccccc2C1=O)C\C=C(/C)\CCC[C@H](C)CCC[C@H](C)CCCC(C)C
CACTVS 3.341CC(C)CCC[CH](C)CCC[CH](C)CCCC(C)=CCC1=C(C)C(=O)c2ccccc2C1=O
CACTVS 3.341CC(C)CCC[C@@H](C)CCC[C@@H](C)CCCC(/C)=C/CC1=C(C)C(=O)c2ccccc2C1=O
FormulaC31 H46 O2
NamePHYLLOQUINONE;
VITAMIN K1;
2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE
ChEMBLCHEMBL1550
DrugBankDB01022
ZINCZINC000003831332
PDB chain6sl5 Chain A Residue 2001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6sl5 Structure and energy transfer pathways of the Dunaliella Salina photosystem I supercomplex.
Resolution2.84 Å
Binding residue
(original residue number in PDB)		M684 F685 S688 G689 W693 L718 G723
Binding residue
(residue number reindexed from 1)		M673 F674 S677 G678 W682 L707 G712
Annotation score1
Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009522 photosystem I
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6sl5, PDBe:6sl5, PDBj:6sl5
PDBsum6sl5
PubMed32569661
UniProtD0FXV2

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