Structure of PDB 8jze Chain b Binding Site BS38

Receptor Information
>8jze Chain b (length=663) Species: 2949 (Symbiodinium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRCASSRYLQVLGSIHDIECGFGIDNTLSLNLQIFTAHWGHLTIILIWVS
SNLYHIASNANYSLWVKNPIPSMPIAHNIWDPHFTNSTSTPYSHTIITTI
LIAYSGIYNQLYTSGFNTINQIYKTTFTFSCLAVISILLAKIHINTHSEL
LHKLASHTSQIPSFFQLLYFLDVAISSVNIRFNFHTGILVGLFSIGYTGH
LLDITIPASRAPLIHTSPSYLTFFGGLKSNTSSLYLTDIAHHHLAIGIIS
ILTGHLYSSFRAALGTYIRDILYTSHLTHSIKSLHLALSLILASCTPLTS
TTAQHIYSLTPYFYLSYDHIYSTALYVHHSYITSFLAIASHAHTAITLVR
DWVAPLEQESSSKQIRIHTHKAAIISHLSWVSLWLGFHTLAVYSHNDTCI
AFNSPSKQILIEASNGQLIQQASGKALYGTINSINNYNKSFDSFIHPISP
GDLYVHHAIALGLHITVLILLKGGLEARGSKLMPDKMEHSFGFSCDGPGR
GGTCDISAWDSFYLATFWMLNSNAWISFYFHYKHLTPRQFSESSTYLESW
FRDYLWFNSTPLIHGYSTLGANDLSVQSWSFLLTHLAWASGFMFLISWRG
YWQELIDIILYIHLKTPILINLWNGDIYTPLALSIVQARFIGLVHFSTGL
ILTYPPFIIGATS
Ligand information
Ligand IDPQN
InChIInChI=1S/C31H46O2/c1-22(2)12-9-13-23(3)14-10-15-24(4)16-11-17-25(5)20-21-27-26(6)30(32)28-18-7-8-19-29(28)31(27)33/h7-8,18-20,22-24H,9-17,21H2,1-6H3/b25-20+/t23-,24-/m1/s1
InChIKeyMBWXNTAXLNYFJB-NKFFZRIASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1=C(C(=O)c2ccccc2C1=O)CC=C(C)CCCC(C)CCCC(C)CCCC(C)C
ACDLabs 10.04O=C2c1c(cccc1)C(=O)C(=C2C)C\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C
OpenEye OEToolkits 1.5.0CC1=C(C(=O)c2ccccc2C1=O)C\C=C(/C)\CCC[C@H](C)CCC[C@H](C)CCCC(C)C
CACTVS 3.341CC(C)CCC[CH](C)CCC[CH](C)CCCC(C)=CCC1=C(C)C(=O)c2ccccc2C1=O
CACTVS 3.341CC(C)CCC[C@@H](C)CCC[C@@H](C)CCCC(/C)=C/CC1=C(C)C(=O)c2ccccc2C1=O
FormulaC31 H46 O2
NamePHYLLOQUINONE;
VITAMIN K1;
2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE
ChEMBLCHEMBL1550
DrugBankDB01022
ZINCZINC000003831332
PDB chain8jze Chain b Residue 729 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jze Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
Resolution2.99 Å
Binding residue
(original residue number in PDB)		Y42 M627 F628 S631 W632 R633 W636 A666 L667 A672
Binding residue
(residue number reindexed from 1)		Y8 M593 F594 S597 W598 R599 W602 A632 L633 A638
Annotation score1
Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009522 photosystem I
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jze, PDBe:8jze, PDBj:8jze
PDBsum8jze
PubMed38319970
UniProtA0A0A0N2P0

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