BioLiP

Receptor Information

>7ymm Chain 34 (length=331) Species: 329726 (Acaryochloris marina MBIC11017) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVPGAFIVQEVAR
YQPGVSLPDQGMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAV
CCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLSTIVGHHLVFIS
VACLIFAVNATYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSG
AGMAAVNNMEDVIGGHFLIGVIDLLGAAFHILYRKPTPLFTKHPVFSPAN
GGWSNVGMLNSELILSWSVASVGFMGISSSLFIRYCDVAYPPVFHGVDRT
GAATLQLILGLVWMLGGGLWHGLRGERLYAA

Ligand ID

ZEX

InChI

InChI=1S/C40H56O2/c1-29(17-13-19-31(3)21-23-35-25-34(6)38(42)28-39(35,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-37-33(5)26-36(41)27-40(37,9)10/h11-25,34,36,38,41-42H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15+,30-16+,31-19+,32-20+/t34-,36-,38+/m0/s1

InChIKey

YRMDXLDAZBQLBK-WIHRHFSMSA-N

SMILES

Software	SMILES
CACTVS 3.341	C[CH]1C=C(C=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC2=C(C)C[CH](O)CC2(C)C)C(C)(C)C[CH]1O
OpenEye OEToolkits 1.5.0	CC1C=C(C(CC1O)(C)C)C=CC(=C\C=C\C(=CC=CC=C(C)C=C\C=C(/C)\C=CC2=C(C[C@@H](CC2(C)C)O)C)C)C
ACDLabs 10.04	OC2CC(=C(\C=C\C(=C\C=C\C(=C\C=C\C=C(\C=C\C=C(\C=C\C1=CC(C)C(O)CC1(C)C)C)C)C)C)C(C)(C)C2)C
OpenEye OEToolkits 1.5.0	CC1C=C(C(CC1O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2=C(CC(CC2(C)C)O)C)C)C
CACTVS 3.341	C[C@H]1C=C(/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C2=C(C)C[C@H](O)CC2(C)C)C(C)(C)C[C@H]1O

Formula

C40 H56 O2

Name

(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol

ChEMBL

DrugBank

ZINC

PDB chain

7ymm Chain 34 Residue 419 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	7ymm Structure of a large photosystem II supercomplex from Acaryochloris marina.
Resolution	3.6 Å
Binding residue (original residue number in PDB)	V232 G235 H236 I239
Binding residue (residue number reindexed from 1)	V212 G215 H216 I219
Annotation score	1

Enzyme Commision number

	Molecular Function
GO:0016168	chlorophyll binding

	Biological Process
GO:0009767	photosynthetic electron transport chain
GO:0015979	photosynthesis
GO:0019684	photosynthesis, light reaction

	Cellular Component
GO:0009521	photosystem
GO:0016020	membrane
GO:0031676	plasma membrane-derived thylakoid membrane

PDB	RCSB:7ymm, PDBe:7ymm, PDBj:7ymm
PDBsum	7ymm
PubMed	38394197
UniProt	B0C3E6

[Back to BioLiP]

Structure of PDB 7ymm Chain 34 Binding Site BS18