Structure of PDB 8wb4 Chain B Binding Site BS17

Receptor Information
>8wb4 Chain B (length=504) Species: 173977 (Chroomonas placoidea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPV
LNPMWRQGMFVMPFMARIGVTDSWGGWSVTGESVANPGFWSFEGVALAHI
GLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCF
GFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGAEGFNPFNPSGVASH
HIAAGILGFLAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFI
TTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLNLSEA
WSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEG
KELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSF
YGGKLNGQVFKDAPTVKKYARKAQLGEVLEFDRTTLESDGVFRSSPRGWY
TFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDR
STKK
Ligand information
Ligand ID8CT
InChIInChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-23,25-28,37H,15-16,24,29-30H2,1-10H3/b12-11-,19-13-,20-14-,27-25+,28-26+,31-17+,32-18-,33-21+,34-22+/t37-/m0/s1
InChIKeyANVAOWXLWRTKGA-GZSHKXEASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CCCC2(C)C)C)C)C
CACTVS 3.385CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C)C=CC=C(C)C=C[CH]2C(=CCCC2(C)C)C
OpenEye OEToolkits 2.0.6CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C\C(=C/C=C\C=C(/C)\C=C/C=C(\C)/C=C/[C@H]2C(=CCCC2(C)C)C)\C)/C
ACDLabs 12.01CC=1CCCC(C=1[C@H]=[C@H]C(=[C@H][C@H]=[C@H]C(C)=[C@H][C@H]=[C@H][C@H]=C(C)[C@H]=[C@H][C@H]=C(C)[C@H]=[C@H]C2C(C)=CCCC2(C)C)C)(C)C
CACTVS 3.385CC(=C/C=C\C=C(C)/C=C\C=C(C)\C=C\C1=C(C)CCCC1(C)C)\C=C/C=C(C)/C=C/[C@H]2C(=CCCC2(C)C)C
FormulaC40 H56
Name(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene
ChEMBL
DrugBank
ZINC
PDB chain8wb4 Chain B Residue 622 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wb4 Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea.
Resolution2.47 Å
Binding residue
(original residue number in PDB)		M25 L29 W115
Binding residue
(residue number reindexed from 1)		M24 L28 W114
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009523 photosystem II
GO:0009536 plastid
GO:0009579 thylakoid
GO:0016020 membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8wb4, PDBe:8wb4, PDBj:8wb4
PDBsum8wb4
PubMed38806516
UniProtA0A222AIE3

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