Structure of PDB 6jlu Chain 10 Binding Site BS17

Receptor Information
>6jlu Chain 10 (length=178) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AFEDELGAQPPLGFFDPLGLVAAAAAAADGDQEKFDRLRYVEIKHGRISM
LAVVGYLVQEAGVRLPGTIDYSGKTFAEIPNGFAAFKEIPAGGLVQLLFF
IGVLESSVMRDLTAAAAAAAAAAAAAAATFDEETQFKKRAIELNQGRAAQ
MGILALMVHEQLGVSLLPAAAAAAAAAA
Ligand information
Ligand IDA86
InChIInChI=1S/C42H58O6/c1-29(18-14-19-31(3)22-23-37-38(6,7)26-35(47-33(5)43)27-40(37,10)46)16-12-13-17-30(2)20-15-21-32(4)36(45)28-42-39(8,9)24-34(44)25-41(42,11)48-42/h12-22,34-35,44,46H,24-28H2,1-11H3/b13-12+,18-14+,20-15+,29-16+,30-17+,31-19+,32-21+/t23-,34-,35-,40+,41+,42-/m0/s1
InChIKeySJWWTRQNNRNTPU-XJUZQKKNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6CC(=CC=CC=C(C)C=CC=C(C)C(=O)CC12C(CC(CC1(O2)C)O)(C)C)C=CC=C(C)C=C=C3C(CC(CC3(C)O)OC(=O)C)(C)C
ACDLabs 12.01C\C(=C/C=C/C=C(/C=C/C=C(\C)C(=O)CC12C(C)(CC(O)CC1(C)O2)C)C)[C@H]=C[C@H]=C([C@H]=C=C3\C(C)(C)CC(CC3(O)C)OC(=O)C)C
OpenEye OEToolkits 2.0.6C/C(=C\C=C\C=C(/C)\C=C\C=C(/C)\C(=O)C[C@]12[C@](O1)(C[C@H](CC2(C)C)O)C)/C=C/C=C(\C)/C=C=C3[C@](C[C@H](CC3(C)C)OC(=O)C)(C)O
CACTVS 3.385CC(=O)O[CH]1CC(C)(C)[C](=[C]=[CH]C(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C(=O)C[C]23O[C]2(C)C[CH](O)CC3(C)C)[C](C)(O)C1
CACTVS 3.385CC(=O)O[C@H]1CC(C)(C)[C](=[C@@]=[CH]C(\C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(/C)C(=O)C[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)[C@](C)(O)C1
FormulaC42 H58 O6
Name(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate;
Fucoxanthin
ChEMBL
DrugBankDB15462
ZINC
PDB chain6jlu Chain 10 Residue 318 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6jlu The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Resolution3.02 Å
Binding residue
(original residue number in PDB)
L119 V120 L123 F124 V128 S132 R135
Binding residue
(residue number reindexed from 1)
L94 V95 L98 F99 V103 S107 R110
Annotation score1
External links