Structure of PDB 8c29 Chain C Binding Site BS16

Receptor Information
>8c29 Chain C (length=433) Species: 3329 (Picea abies) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVA
HFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSA
VLGFGGIYHALIGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAF
LLVLKALYFGGVYDTWAPGGGDVRKITNPTLNPSAIFGYLLKSPFGGEGW
IVSVDNLEDVIGGHVWLGSICIFGGIWHILTKPFAWARRAFVWSGEAYLS
YSLAALSLFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQR
LGASVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWLEPLRGPN
GLDLSKLRKDIQPWQERRSAEYMTHAPNYVSPRSWLATSHFVLGFFLFVG
HLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Ligand information
Ligand IDLNL
InChIInChI=1S/C18H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h3-4,6-7,9-10H,2,5,8,11-17H2,1H3,(H,19,20)/b4-3-,7-6-,10-9-
InChIKeyDTOSIQBPPRVQHS-PDBXOOCHSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)CCCCCCC\C=C/C\C=C/C\C=C/CC
CACTVS 3.341CCC=CCC=CCC=CCCCCCCCC(O)=O
CACTVS 3.341CC\C=C/C/C=C\C\C=C/CCCCCCCC(O)=O
OpenEye OEToolkits 1.5.0CCC=CCC=CC\C=C/CCCCCCCC(=O)O
OpenEye OEToolkits 1.5.0CCC=CCC=CCC=CCCCCCCCC(=O)O
FormulaC18 H30 O2
NameALPHA-LINOLENIC ACID
ChEMBLCHEMBL8739
DrugBankDB00132
ZINCZINC000003802189
PDB chain8c29 Chain C Residue 522 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8c29 Cryo-EM structure of a plant photosystem II supercomplex with light-harvesting protein Lhcb8 and alpha-tocopherol.
Resolution2.785 Å
Binding residue
(original residue number in PDB)		F173 L177 L180
Binding residue
(residue number reindexed from 1)		F150 L154 L157
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005737 cytoplasm
GO:0009507 chloroplast
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8c29, PDBe:8c29, PDBj:8c29
PDBsum8c29
PubMed37550369
UniProtR4ZGZ0

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