Structure of PDB 6vg1 Chain B Binding Site BS16

Receptor Information
>6vg1 Chain B (length=641) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTVRYRTYEEDEPGTVIGTLAEDLHLEGEGSFRLMKQFNNSLIHVRESDG
QLSIGERIDRERICRQSPHCTLALDVVSVAKEQFKLIHVEVEVRDINDNS
PRFPGAEIPVEVSESAPVGTRIPLDIATDEDVGVNSIQSFQISENSHFSI
DVQTRADGVKYADLVLMKELDRESQSAYTLELLAMDGGSPSRSGTTMVNV
RVLDFNDNSPVFERSSVMVELMEDAPVGHLLLDLDALDPDEGANGEIVYG
FSPQVPQEVRQLFKIDAKSGRLTLEGQVDFETKQTYEFDAQAQDMALNPL
TATCKVIVRVIDVNDNAPVIGITPLTSISAGVAYITEAAARESFVALIST
TDRDSGQNGQVHCTLYGHEHFRLQQAYEDSYMIVTTSALDREKIAEYNLT
VVAEDLGSPPFKTVKQYTIRVSDENDNAPVFAKPVYEVSVLENNAPGAYI
TTVVARDPDFGHNGKVIYRLVETEVMGAPITTYVSLDPATGAVYALRTFN
HEILQQLDLRIQASDGGSPQLTSSAIIKVKIVDQNDNAPVIVQPALSNGS
AEVVVPSRAPHGFLVTHIKAKDADEGVNAELTYSIADEGRNVFTINKATG
EVFLVADVSEAIGQVFRATVSVSDSGRPPLSSTATITFLVT
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain6vg1 Chain B Residue 721 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vg1 Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		M185 S193
Binding residue
(residue number reindexed from 1)		M185 S193
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6vg1, PDBe:6vg1, PDBj:6vg1
PDBsum6vg1
PubMed32101743
UniProtQ6GLU2

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