Structure of PDB 8wmj Chain i Binding Site BS15

Receptor Information
>8wmj Chain i (length=175) Species: 52970 (Rhodomonas salina) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DMSASVPFLPRPAALDGSMVGDVGFDPLGFTTKYDIKWLRESELKHGRVC
MLASLGCIVQEIVHLPFEATSNPVASEAFFQVPAGGLWQIFAGIGIVEHF
SNNFKMSGSTMRAPGNLGFDPLNFGKNPSARARYELAEIKNGRLAMLGFG
GMIHGCFITGKGPIGALTSMDWHQS
Ligand information
Ligand IDWVN
InChIInChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-23,25-28,37H,15-16,24,29-30H2,1-10H3/b12-11+,19-13+,20-14+,27-25+,28-26+,31-17+,32-18+,33-21+,34-22+/t37-/m0/s1
InChIKeyANVAOWXLWRTKGA-NTXLUARGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CCCC2(C)C)C)C)C
CACTVS 3.385CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C)C=CC=C(C)C=C[CH]2C(=CCCC2(C)C)C
CACTVS 3.385CC(=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C1=C(C)CCCC1(C)C)/C=C/C=C(C)/C=C/[C@H]2C(=CCCC2(C)C)C
OpenEye OEToolkits 2.0.7CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=CCCC2(C)C)C)/C)/C
FormulaC40 H56
Name1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene;
ALPHA-CAROTENE
ChEMBL
DrugBank
ZINC
PDB chain8wmj Chain i Residue 316 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wmj Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
F63 S114 F117 L190 F192 G193 I196 F200
Binding residue
(residue number reindexed from 1)
F25 S76 F79 L147 F149 G150 I153 F157
Annotation score1
External links