Structure of PDB 8c29 Chain C Binding Site BS15

Receptor Information
>8c29 Chain C (length=433) Species: 3329 (Picea abies) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVA
HFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSA
VLGFGGIYHALIGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAF
LLVLKALYFGGVYDTWAPGGGDVRKITNPTLNPSAIFGYLLKSPFGGEGW
IVSVDNLEDVIGGHVWLGSICIFGGIWHILTKPFAWARRAFVWSGEAYLS
YSLAALSLFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQR
LGASVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWLEPLRGPN
GLDLSKLRKDIQPWQERRSAEYMTHAPNYVSPRSWLATSHFVLGFFLFVG
HLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Ligand information
Ligand IDLNL
InChIInChI=1S/C18H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h3-4,6-7,9-10H,2,5,8,11-17H2,1H3,(H,19,20)/b4-3-,7-6-,10-9-
InChIKeyDTOSIQBPPRVQHS-PDBXOOCHSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)CCCCCCC\C=C/C\C=C/C\C=C/CC
CACTVS 3.341CCC=CCC=CCC=CCCCCCCCC(O)=O
CACTVS 3.341CC\C=C/C/C=C\C\C=C/CCCCCCCC(O)=O
OpenEye OEToolkits 1.5.0CCC=CCC=CC\C=C/CCCCCCCC(=O)O
OpenEye OEToolkits 1.5.0CCC=CCC=CCC=CCCCCCCCC(=O)O
FormulaC18 H30 O2
NameALPHA-LINOLENIC ACID
ChEMBLCHEMBL8739
DrugBankDB00132
ZINCZINC000003802189
PDB chain8c29 Chain C Residue 519 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8c29 Cryo-EM structure of a plant photosystem II supercomplex with light-harvesting protein Lhcb8 and alpha-tocopherol.
Resolution2.785 Å
Binding residue
(original residue number in PDB)		V61 W97 P110 L117 H118 S121
Binding residue
(residue number reindexed from 1)		V38 W74 P87 L94 H95 S98
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005737 cytoplasm
GO:0009507 chloroplast
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8c29, PDBe:8c29, PDBj:8c29
PDBsum8c29
PubMed37550369
UniProtR4ZGZ0

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