Structure of PDB 7wlm Chain A Binding Site BS15

Receptor Information
>7wlm Chain A (length=201) Species: 3133 (Codium fragile) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IEFYGPDRALWLGPYSEGAVPSYLTGEFPGDYGWDSAGLSADPETFAANR
ELELIHARWAMLGVVGCLTPEALEKYSGVEFGEATWFKAGSQIFAEGGID
YLGNPSLVHAQSILAIVWSQVVLMGLAEGYRVSGGPLGEATDPLYPGEAF
DPFGFADDPETFSELKIKEIKNGRLAMFAMFGFFVQALQTGKGPVECWAS
H
Ligand information
Ligand ID0IE
InChIInChI=1S/C40H56O4/c1-28(16-12-17-30(3)20-21-36-31(4)22-34(42)25-39(36,6)7)14-10-11-15-29(2)18-13-19-33(27-41)38(44)24-37-32(5)23-35(43)26-40(37,8)9/h10-22,34-36,41-43H,23-27H2,1-9H3/b11-10+,16-12+,18-13+,21-20+,28-14+,29-15+,30-17+,33-19+/t34-,35+,36-/m0/s1
InChIKeySUCKEYMKNGZJHK-ZARIWKGHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1=C(C(C[C@@H](C1)O)(C)C)CC(=O)/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=C[C@@H](CC2(C)C)O)C)/C)/CO
CACTVS 3.385CC1=C(CC(=O)/C(CO)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/[C@H]2C(=C[C@H](O)CC2(C)C)C)C(C)(C)C[C@H](O)C1
CACTVS 3.385CC1=C(CC(=O)C(CO)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[CH]2C(=C[CH](O)CC2(C)C)C)C(C)(C)C[CH](O)C1
OpenEye OEToolkits 2.0.7CC1=C(C(CC(C1)O)(C)C)CC(=O)C(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CC(CC2(C)C)O)C)C)CO
FormulaC40 H56 O4
NameSiphonaxanthin
ChEMBLCHEMBL5287816
DrugBank
ZINCZINC000085886125
PDB chain7wlm Chain A Residue 616 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7wlm Structural insights into blue-green light utilization by marine green algal light harvesting complex II at 2.78 angstrom.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		W34 D35 W59 G63 G66 C67 W86 M177 M180
Binding residue
(residue number reindexed from 1)		W34 D35 W59 G63 G66 C67 W86 M177 M180
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0009765 photosynthesis, light harvesting
Cellular Component
GO:0016020 membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7wlm, PDBe:7wlm, PDBj:7wlm
PDBsum7wlm
PubMed37082593
UniProtA0A8S0G488

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