Structure of PDB 6m32 Chain A Binding Site BS15

Receptor Information
>6m32 Chain A (length=628) Species: 194439 (Chlorobaculum tepidum TLS) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKWYQIFDTEKLDDEQVVGGHLALLGVLGFIMGIYYISGIQVFPWGAPGF
HDNWFYLTIKPRMVSLGIDTYSTKTADLEAAGARLLGWAAFHFLVGSVLI
FGGWRHWTHNLTNPFTGRCGNFRDFSAKSYKEALGPHAVYMSLLFLGWGI
VMWAILGFAPIPDFQTINSETFMSFVFAVIFFALGIYWWNNPPNAAIHLN
DDMKAAFSVHLTAIGYINIALGCIAFVAFQQPSFAPYYKELDKLVFYLYG
EPFNRVSFNFSGAKEFADFPAYAILPKSGEAFGMARVVTNLIVFNHIICG
VLYVFAGVYHGGQYLLKIQLNGMYNQIKSIWITKGRDQEVQVKILGTVMA
LCFATMLSVYAVIVWNTICELNIFGTNITMSFYWLKPLPIFQWMFADPSI
NDWVMAHVITAGSLFSLIALVRIAFFAHTSPLWDDLGLKKNSYSFPCLGP
VYGGTCGVSIQDQLWFAMLWGIKGLSAVCWYIDGAWIASMMYGVPAADAK
AWDSIAHLHHHYTSGIFYYFWTETVTIFSSSHLSTILMIGHLVWFISFAV
WFEDRGSRLEGADIQTRTIRWLGKKFLNRDVNFRFPVLTISDSKLAGTFL
YFGGTFMLVFLFLANGFYQTNSPLPPPV
Ligand information
Ligand IDF39
InChIInChI=1S/C58H86O7/c1-12-13-14-15-16-17-18-19-20-36-53(59)63-42-52-54(60)55(61)56(62)57(64-52)65-58(10,11)41-26-35-46(5)33-24-32-45(4)31-23-29-43(2)27-21-22-28-44(3)30-25-34-47(6)37-40-51-49(8)39-38-48(7)50(51)9/h21-25,27-34,37-40,52,54-57,60-62H,12-20,26,35-36,41-42H2,1-11H3/b22-21?,29-23+,30-25?,32-24+,40-37+,43-27+,44-28?,45-31+,46-33?,47-34-/t52-,54-,55+,56-,57-/m1/s1
InChIKeyNXEFUAFHBLRHFO-DDUHONCASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCC(=O)OCC1C(C(C(C(O1)OC(C)(C)CCCC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=Cc2c(ccc(c2C)C)C)C)C)C)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCCCCCC(=O)OC[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OC(C)(C)CCCC(=CC=C/C(=C/C=C/C(=C/C=CC=C(C)C=CC=C(C)C=Cc2c(ccc(c2C)C)C)/C)/C)C)O)O)O
CACTVS 3.385CCCCCCCCCCCC(=O)OC[C@H]1O[C@H](OC(C)(C)CCC\C(C)=C/C=C/C(C)=C/C=C/C(C)=C/C=C\C=C(C)/C=C\C=C(C)/C=C/c2c(C)ccc(C)c2C)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.385CCCCCCCCCCCC(=O)OC[CH]1O[CH](OC(C)(C)CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=Cc2c(C)ccc(C)c2C)[CH](O)[CH](O)[CH]1O
FormulaC58 H86 O7
Name[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate
ChEMBL
DrugBank
ZINC
PDB chain6m32 Chain A Residue 817 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6m32 Architecture of the photosynthetic complex from a green sulfur bacterium.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
F236 Y288 I296 Q303 S305 H376
Binding residue
(residue number reindexed from 1)
F164 Y216 I224 Q231 S233 H296
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6m32, PDBe:6m32, PDBj:6m32
PDBsum6m32
PubMed33214250
UniProtQ8KAY0

[Back to BioLiP]