Structure of PDB 8wb4 Chain 1 Binding Site BS15

Receptor Information
>8wb4 Chain 1 (length=194) Species: 173977 (Chroomonas placoidea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YKDGIIQGLGVEAIPGAGRPANLDGTLVGDVGFDPLGFSNWLDLRWAREA
EIKHGRVAMLAATGMIVQDAYKFPGFEGEFGGAAMMKLHNLAVEQGAMQQ
LLLWLGLLEIISGVPAIIQTLNGSERQPGDFGFDPLNCGANPDTLARRQL
TELKNGRLAMIAVGGMVHHYLLVGRGPIEFITNIPNFKNPLPPF
Ligand information
Ligand IDII3
InChIInChI=1S/C40H54O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-21,23,25,35-37,41-42H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,29-15+,30-16+,31-19+,32-20+/t35-,36+,37-/m0/s1
InChIKeyVAGYSFRRYPPSFX-RLVOMNFVSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(=C\C=C\C=C(C)\C=C\C=C(C)\C#CC1=C(C)C[C@@H](O)CC1(C)C)/C=C/C=C(C)/C=C/[C@H]2C(=C[C@H](O)CC2(C)C)C
OpenEye OEToolkits 2.0.7CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=C[C@@H](CC2(C)C)O)C)/C)/C
CACTVS 3.385CC(=CC=CC=C(C)C=CC=C(C)C#CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C=C[CH]2C(=C[CH](O)CC2(C)C)C
OpenEye OEToolkits 2.0.7CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CC(CC2(C)C)O)C)C)C
FormulaC40 H54 O2
Name(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol;
Monadoxanthin
ChEMBL
DrugBank
ZINCZINC000255272544
PDB chain8wb4 Chain 1 Residue 615 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wb4 Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea.
Resolution2.47 Å
Binding residue
(original residue number in PDB)
P76 F79 A102 M106 M126 H130 M201
Binding residue
(residue number reindexed from 1)
P35 F38 A61 M65 M85 H89 M160
Annotation score1
External links