Structure of PDB 8evr Chain BQ Binding Site BS14
Receptor Information
>8evr Chain BQ (length=141) Species:
4932
(Saccharomyces cerevisiae) [
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AVPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPL
LLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSK
NELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR
Ligand information
Ligand ID
U
InChI
InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey
DJJCXFVJDGTHFX-XVFCMESISA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O
CACTVS 3.341
O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0
C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
OpenEye OEToolkits 1.5.0
C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O
CACTVS 3.341
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
Formula
C9 H13 N2 O9 P
Name
URIDINE-5'-MONOPHOSPHATE
ChEMBL
CHEMBL214393
DrugBank
DB03685
ZINC
ZINC000002123545
PDB chain
8evr Chain BQ Residue 236 [
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Receptor-Ligand Complex Structure
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PDB
8evr
Regulation of translation by ribosomal RNA pseudouridylation.
Resolution
2.87 Å
Binding residue
(original residue number in PDB)
K14 G72 G73
Binding residue
(residue number reindexed from 1)
K12 G70 G71
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
Biological Process
GO:0000462
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412
translation
GO:0006413
translational initiation
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005840
ribosome
GO:0022627
cytosolic small ribosomal subunit
GO:0030686
90S preribosome
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:8evr
,
PDBe:8evr
,
PDBj:8evr
PDBsum
8evr
PubMed
37595043
UniProt
P0CX51
|RS16A_YEAST Small ribosomal subunit protein uS9A (Gene Name=RPS16A)
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