Structure of PDB 8wmw Chain e Binding Site BS13

Receptor Information
>8wmw Chain e (length=169) Species: 52970 (Rhodomonas salina) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLAVPFLKAPAKLDSSMPGYAGFDPLGCSDFYDVKWLQEAEIKNGRVAML
GVVGLLVPEFFHLPMYTAGATPYESYTTVPAFALIQIFLGCGAVEYFTHK
GKISPDNMFDGGRVPGEFGWGKADMTMQTKEIKNGRLAMLAFGGILHQQL
FTKMGTIAHLTGGFKPLTF
Ligand information
Ligand IDII0
InChIInChI=1S/C40H52O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-20,35-36,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,29-15+,30-16+,31-19+,32-20+/t35-,36-/m1/s1
InChIKeyDVICWXUADSCSLL-DDEWRDOISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(/C#CC2=C(C[C@H](CC2(C)C)O)C)\C)\C)/C)/C
CACTVS 3.385CC(=C\C=C\C=C(C)\C=C\C=C(C)\C#CC1=C(C)C[C@@H](O)CC1(C)C)/C=C/C=C(C)/C#CC2=C(C)C[C@@H](O)CC2(C)C
OpenEye OEToolkits 2.0.7CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C#CC2=C(CC(CC2(C)C)O)C)C)C
CACTVS 3.385CC(=CC=CC=C(C)C=CC=C(C)C#CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C#CC2=C(C)C[CH](O)CC2(C)C
FormulaC40 H52 O2
Name(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol;
Alloxanthin
ChEMBL
DrugBank
ZINC
PDB chain8wmw Chain e Residue 613 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8wmw Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
F57 P59 L60 C62 Y107 Y110 F176
Binding residue
(residue number reindexed from 1)
F23 P25 L26 C28 Y73 Y76 F142
Annotation score1
External links