Structure of PDB 9b4h Chain A Binding Site BS13

Receptor Information
>9b4h Chain A (length=1908) Species: 3055 (Chlamydomonas reinhardtii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ATYTLTLDKLGPTVNPTTSDAVTFTATVASPDSTTAVFFTLDYGDGVTAE
TTRTTTGALSTTPTANLVSAGTYTVTYASIGTKFVTLRLYDSAVAPGVLL
ASKTVPIYVEDSTLTATLLQSGVPRLNLAFSGFKGRVSSSTANRADMWAT
IQLDTAPGVFESSRIFIGIAPTASTNYDFVIPDQVYNLEGAKTTVLRIYD
APVGGTLLRTFTPAAANAVYVVDPSKYVLTLTVGPTSVTTADQVTFTQTT
TEVSYSASATSPILQWRFNWDDPSVVETPLAYPDALTAASNFPTTATAVS
SAAASTFRYTSTGSKNARLRLYDGANNVIAEKIVVITVSNAGYTLALAKT
TADPVTTDDTIAFSAGAKHLSSTSQVWWTIDYGAGESSPRTALTMTNVGA
AAPNAIASLSNQYTSGGTKLATLRIYDRDGVGANTGLLLASTTVTFTVTP
VLYALESAVEPFSPIATVAAKWSFRIQRSKATPAGVTESIKCAFFGADTG
TAPADLAAWLTAANGAGGLTATILPSSIPSDIISFTRTYAAAAASLQGKL
QCFIGSTPLWDPYYPTPVFQVLAAAPTYTLSASVTPAVVPVDTATLWTYN
IIRSVPVPAGGPSLPILCSFWDGKTGAAPTTDAGWAALAGSANGKGTSMA
PGSTTATCSFTPSYSTTGTATPTLQLIQNSFALDAATTVGFLSPVYTAPA
FATVTAASYTISSYLNPVTPVAGGAAAVWRIVITRNAAVTASAKTLTCQM
PDNGQGGSPADVTADIAVGGTTTVCVFSIAGYTTATPGPYFATVNVVDGA
VTTSHITKNFTVLASGTTAPTYAVTSVVSPATPVKVSTPVTYTFTITRTT
AVPAGGIPQPIICEFFNGEGTAPASAAAYWRVSTTIPDADTVVAVMAPGE
TTTTCTFTTYYTTVSAGGFTAKLMVFGESATAAPLLTSLSVTPSQLLAAV
HSFATPMVVAAAVVAVESTTISPNYNPTTPYTNIPTYFTFTLLRDPPVPP
SASSGVQFACALYTGQNVNPASAPSAITDAVYKTFTDVTTAVATDANYFA
DQQLRVVTMAPGTGRVSCTFPTLYAAAGPFSPKFFVFEYASSTVGANALA
VADTVTSLTSFTTQAAPTFITGPTNVPQRVPLPKGFRTTCFDGYELIFSN
DNYTNGVRVAVDAYPYPVGQCRKCPGGTATMDGYRCIPCPSGYWSNEGAR
ECTACPAGTIAKPAALTARAKYSIDPTTYHFVTHLAMGPESCKKCPKGYF
QPNIAGTVCLPCPSGFVSTSGATGCTACSEGTYHTDGVGTTTPGEATSLD
TTDTFGSIYPIIPNTCRQCPANTYLPLRGQAAIASMNLAAVSSATPCRPC
EDGTWSKAGAAGCQKCPPGTYRNTWFSGQLGSPFITADGVPVATTLTELG
SGCSQCPPGTYAPTFGMSVCLPCPAGTFASAPGATACQQCKPGTNSLMGD
RTQQMALVVTNAANDFPALRAYTISGMVAGPAYAKPIVTGPDTNFFMAGK
SETCSTNLPGYYTDVDGLPIQLPCKPGTFMPFDTATANLLDTGLTVDGTQ
CYTCQTGTFNDEFSQPVCKACWSGSFASKRGLPTCEIAQPGTFTNVAAAA
NATFNTATLIPTGLVKGAQAPTPCGMGYFQSSAETTTCTACAVGTYADQA
GLAACKPCQPGRYQNSIGQRVCKPCDMGTYSRYGGELCTKCPAGTVASKT
GSSQCTPCAAGFYANAPDSATSCRACPRGYYGPYSGAYADNLGDEFEGPR
GCYKCPYDFFADRPGVRQCTACPPLDLGGGNLVEQCTEDLGSQRCKPCSL
LSKPKTARTEQSPPPPSPSPPPPPPPSPRPPSPNPPSPRPPSPAPPSPNP
PPTSPPPSPPPSPPPPRPPPPPPPPPSPPPPNRSPPPPPPASSAINPGGG
VNQNGDPV
Ligand information
Ligand IDFUB
InChIInChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1
InChIKeyHMFHBZSHGGEWLO-KLVWXMOXSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(OC(O)C1O)CO
FormulaC5 H10 O5
Namebeta-L-arabinofuranose;
beta-L-arabinose;
L-arabinose;
arabinose
ChEMBL
DrugBank
ZINCZINC000004097027
PDB chain9b4h Chain E6 Residue 8 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9b4h Mastigoneme structure reveals insights into the O-linked glycosylation code of native hydroxyproline-rich helices.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		P1912 P1914
Binding residue
(residue number reindexed from 1)		P1870 P1872
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links