Structure of PDB 7o0v Chain M Binding Site BS11

Receptor Information
>7o0v Chain M (length=315) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TRVQVRTVPEPGIFSYLAGKFGDAQIGPIYLGWAGVLSLIFGFIAIEIIG
LNMWASVGWDPVEFIRQLPWLALEPPPPQYGLRVPPLNQGGWYLMAGFFL
TVSIILWWIRIYRRARALQMGSHLPWAFASAIFLYSTFFFQPLLVGSWSE
MVPFGIFPHLDWTSAFSIRYGNLYYNPFHALSIAFLYGSAVLFAMHGATI
LAVARMGGEREIEQITDRGTAAERSMLFWRWCMGFNATMESIHRWAWWFA
VLTTFTGGIGILLTGTVVDNWYLWGVKHGLVAPYPAQNQLTPEQQDLLRG
RYQGTAPDSFPSYVV
Ligand information
Ligand ID0V9
InChIInChI=1S/C37H72NO8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-36(39)43-33-35(34-45-47(41,42)44-32-31-38)46-37(40)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h14,16,35H,3-13,15,17-34,38H2,1-2H3,(H,41,42)/b16-14-/t35-/m1/s1
InChIKeyCZOSTDZGCCEZTJ-WMHOIYFHSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(OCC(OC(=O)CCCCCCC\C=C/CCCCCC)COP(=O)(OCCN)O)CCCCCCCCCCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=O)CCCCCCC/C=C\CCCCCC
CACTVS 3.370CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC\C=C/CCCCCC
CACTVS 3.370CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCC=CCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCCC=CCCCCCC
FormulaC37 H72 N O8 P
Name(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate
ChEMBL
DrugBank
ZINCZINC000032793830
PDB chain7o0v Chain aj Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7o0v 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		F161 F162
Binding residue
(residue number reindexed from 1)		F139 F140
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 09:56:19 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7o0v', asym_id = 'M', bs = 'BS11', title = '2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7o0v', asym_id='M', bs='BS11', title='2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009772,0019684,0030077,0045156', uniprot = '', pdbid = '7o0v', asym_id = 'M'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009772,0019684,0030077,0045156', uniprot='', pdbid='7o0v', asym_id='M')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>