Structure of PDB 8jjr Chain F Binding Site BS11

Receptor Information
>8jjr Chain F (length=225) Species: 2950 (Symbiodinium sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EMATLPKHMQPVDTADYPVYKPGPSGVPKLPQLVGDWGVPLPGSYKACLT
MVGPDVETACEVGKPWDPLGLSKLYDRNFDFNGNMTYPHVQWLRESELKH
GRCAMLAIVGIFAQQSFHIDGYPEAPWYEALKACYDNPAGIVGFGIAQIS
AFAMVIEGAYFPKDSWIGQMDREPGDLGFDPLKLAKDAESMKSMQLKELK
NGRLAMMAFMSCVVGHYVPGSVPGV
Ligand information
Ligand IDDD6
InChIInChI=1S/C40H54O3/c1-29(17-13-19-31(3)21-22-36-33(5)25-34(41)26-37(36,6)7)15-11-12-16-30(2)18-14-20-32(4)23-24-40-38(8,9)27-35(42)28-39(40,10)43-40/h11-20,23-24,34-35,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23-,29-15+,30-16+,31-19+,32-20+/t34-,35+,39-,40+/m1/s1
InChIKeyOGHZCSINIMWCSB-WMTIXGNLSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01CC([C@H]=C[C@H]=C(C#CC=1C(C)(C)CC(CC=1C)O)C)=[C@H]C=[C@H]\C=C(/C)\C=C\C=C(/C)\C=C/C32OC2(CC(CC3(C)C)O)C
OpenEye OEToolkits 2.0.6CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C)C)C
CACTVS 3.385CC1=C(C#CC(\C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C/[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)C(C)(C)C[C@H](O)C1
OpenEye OEToolkits 2.0.6CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C\[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C)/C)/C
CACTVS 3.385CC1=C(C#CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)C(C)(C)C[CH](O)C1
FormulaC40 H54 O3
Name(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol;
Diadinoxanthin
ChEMBL
DrugBank
ZINC
PDB chain8jjr Chain F Residue 611 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jjr Architecture of symbiotic dinoflagellate photosystem I-light-harvesting supercomplex in Symbiodinium.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
M166 D241 P242 L243 L265 A269
Binding residue
(residue number reindexed from 1)
M105 D180 P181 L182 L204 A208
Annotation score1
Gene Ontology
Biological Process
GO:0009765 photosynthesis, light harvesting
Cellular Component
GO:0016020 membrane

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Biological Process

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Cellular Component
External links
PDB RCSB:8jjr, PDBe:8jjr, PDBj:8jjr
PDBsum8jjr
PubMed38493166
UniProtA0AA36INW6

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