Structure of PDB 6z1j Chain M Binding Site BS10

Receptor Information
>6z1j Chain M (length=301) Species: 1063 (Cereibacter sphaeroides) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEYQNIFTQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPI
YLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPE
YGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAF
LSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNP
FHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAAL
FWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQN
H
Ligand information
Ligand IDNKP
InChIInChI=1S/C21H41O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21(23)27-18-20(22)19-28-29(24,25)26/h9-10,20,22H,2-8,11-19H2,1H3,(H2,24,25,26)/b10-9+/t20-/m1/s1
InChIKeyWRGQSWVCFNIUNZ-SQUSKLHYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CCCCCCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)O)O
CACTVS 3.370CCCCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(O)=O
CACTVS 3.370CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@@H](O)CO[P](O)(O)=O
OpenEye OEToolkits 1.7.0CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O
ACDLabs 12.01O=P(OCC(O)COC(=O)CCCCCCC/C=C/CCCCCCCC)(O)O
FormulaC21 H41 O7 P
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate;
18:1 LPA;
oleoyl lysophosphatidic acid
ChEMBL
DrugBank
ZINCZINC000014953257
PDB chain6z1j Chain M Residue 415 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6z1j Novel approaches for the lipid sponge phase crystallization of the Rhodobacter sphaeroides photosynthetic reaction center.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		H145 R267
Binding residue
(residue number reindexed from 1)		H145 R267
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex
GO:0042717 plasma membrane-derived chromatophore membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6z1j, PDBe:6z1j, PDBj:6z1j
PDBsum6z1j
PubMed33209319
UniProtP0C0Y9|RCEM_CERSP Reaction center protein M chain (Gene Name=pufM)

[Back to BioLiP]