Structure of PDB 8ow6 Chain D Binding Site BS10

Receptor Information
>8ow6 Chain D (length=149) Species: 35672 (Heterocapsa pygmaea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DKIDDAAKKLSAASYPFLKEIDWSSDVYAKLPTAGPFDVLKAIDKMIVMG
AAMDGAALKAGAEAHHKALGSIDAKGVTSLADYTAINAAIGHMVASAGES
KTMDVYNAFDSFSLGKDVGPYMMSKVSANDASKAYKAFLEFKDAVKASQ
Ligand information
Ligand IDW4O
InChIInChI=1S/C51H80O15/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-42(53)61-36-39(64-43(54)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)37-62-50-49(60)47(58)45(56)41(66-50)38-63-51-48(59)46(57)44(55)40(35-52)65-51/h5-8,11-14,17-20,23-26,39-41,44-52,55-60H,3-4,9-10,15-16,21-22,27-38H2,1-2H3/b7-5-,8-6-,13-11-,14-12-,19-17-,20-18-,25-23-,26-24-/t39-,40-,41-,44+,45+,46+,47+,48-,49-,50-,51+/m1/s1
InChIKeyVXOQBABFAYTJKD-LAAVQGTGSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC=CCC=CCC=CCC=CCCCCC(=O)OC[CH](CO[CH]1O[CH](CO[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O)OC(=O)CCCCC=CCC=CCC=CCC=CCC
OpenEye OEToolkits 2.0.7CC/C=C\C/C=C\C/C=C\C/C=C\CCCCC(=O)OC[C@H](CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)OC(=O)CCCC/C=C\C/C=C\C/C=C\C/C=C\CC
CACTVS 3.385CC/C=C\C\C=C/C\C=C/C\C=C/CCCCC(=O)OC[C@H](CO[C@@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H](O)[C@H]1O)OC(=O)CCCC\C=C/C/C=C\C\C=C/C/C=C\CC
OpenEye OEToolkits 2.0.7CCC=CCC=CCC=CCC=CCCCCC(=O)OCC(COC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)O)O)OC(=O)CCCCC=CCC=CCC=CCC=CCC
FormulaC51 H80 O15
Name[(2~{S})-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-[(6~{Z},9~{Z},12~{Z},15~{Z})-octadeca-6,9,12,15-tetraenoyl]oxy-propyl] (6~{Z},9~{Z},12~{Z},15~{Z})-octadeca-6,9,12,15-tetraenoate
ChEMBL
DrugBank
ZINC
PDB chain8ow6 Chain D Residue 615 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ow6 Structural and Spectroscopic Characterization of the Peridinin-Chlorophyll a-Protein (PCP) Complex from Heterocapsa pygmaea (HPPCP)
Resolution1.2 Å
Binding residue
(original residue number in PDB)
M46 Y106 F109 D110 G115 Y135 K136
Binding residue
(residue number reindexed from 1)
M46 Y106 F109 D110 G115 Y135 K136
Annotation score1
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Cellular Component
GO:0030076 light-harvesting complex

View graph for
Molecular Function

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Cellular Component
External links
PDB RCSB:8ow6, PDBe:8ow6, PDBj:8ow6
PDBsum8ow6
PubMed
UniProtQ9FEY4

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