Structure of PDB 8rgd Chain A Binding Site BS10

Receptor Information

>8rgd Chain A (length=338) Species: 566679 (Bradyrhizobium sp. ORS 375) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DLKLPRQRVDLVAPPFVHVHEQATKQGPKIMEFKLVVQEKKMVIDEKGTT
FQAMTFNGSMPGPLMVVHEGDYVEVTLVNPATNTMPHNIDFHSATGALGG
GALTLINPGEQVVLRWKATRTGVFVYHCAPGGPMIPWHVVSGMNGAVMVL
PRDGLNDGHGHSLRYDRIYYIGEQDLYVPRDEKGNFKSYDSPGEAYSDTE
EVMRKLTPTHVVFNGKAGALTGKNALNANVGENVLIVHSQANRDSRPHLI
GGHGDYVWETGKFSNAPETGLETWFIRGGSAGAALYKFLQPGIYAYVTHN
LIEAANLGATAHFKVEGKWNDDLMTQVKAPADIPTGST

Ligand information

Ligand ID

InChI

InChI=1S/HNO/c1-2/h1H

InChIKey

ODUCDPQEXGNKDN-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.385 OpenEye OEToolkits 2.0.7	[N]=O

Formula

N O

Name

NITRIC OXIDE;
Nitrogen monoxide

PDB chain

8rgd Chain A Residue 509 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8rgd Spectroscopically validated pH-dependent MSOX movies provide detailed mechanism of copper nitrite reductases.
Resolution	1.71 Å
Binding residue (original residue number in PDB)	H94 H129
Binding residue (residue number reindexed from 1)	H92 H127
Annotation score	1

Gene Ontology

	Molecular Function
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding
GO:0050421	nitrite reductase (NO-forming) activity

	Biological Process
GO:0019333	denitrification pathway
GO:0042128	nitrate assimilation

	Cellular Component
GO:0042597	periplasmic space

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Cellular Component

External links

PDB	RCSB:8rgd, PDBe:8rgd, PDBj:8rgd
PDBsum	8rgd
PubMed	39002715
UniProt	H0SLX7

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