Structure of PDB 7vzg Chain A Binding Site BS10

Receptor Information
>7vzg Chain A (length=854) Species: 458033 (Chloracidobacterium thermophilum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRWYQKLELPMPPERIFGAHMMLIGGLACLIGTYFFASMTMWNDGYVNLT
LRPRLISLGIYDPYDTEQIQRVWLPLIGEFSTSKLPFFGQYPLTMTDFRL
FGWGCFHIGLGLWLVYAGAAHYYGARGGATIGEIFWLLPYVPGLKGLCQI
KWFTPEGPWYKVGLPWGSFANTPWPILRRTYADALSPHTIYIGLLFFIWG
FVLWFVLDKPPVPLQPAQVMTPNGLMPLEQAPFPYGWFDPYLNQVMHPMN
TINGETTMCFVWGVLFVALGAYWWYRPPRSINITHLEDTKAVFHVHLTAI
GYVSFALAIVGFLALRNHPSYLMLNDMNVIIYGKKIVNPGRMIHNMITFN
HVQVGLLYVAAGVFHGGQYLHGLNISGAYKQARSKFITWFQNPDLQTKIV
GTTMFVSFVTVVFGYGMICWNTGAELDLNFGIYQFRSFRAIQMDGEAGNI
GYRVFRPKNPWDPTAGGDWVKNPDGTAKLVKARNLQVGDRILNEELGIGS
SPTYSFTTIEEINYKPEWGQPKLYAVQWGSWTHFLRKVNPLFWVDKGIWY
LQNQKTFEATRKADEAYLAAHLKAVSLLNQIDDAQTEEAKQKAQAELDKF
RPELEKAHANMLEWNERLASTPAVLYSNLRDQHRDGEINDAIFFWLMIGG
WLFGFIPLLRIAFHNYQSPWYRDFEWRKQSPDFPCIGPVKGGTCGVSIQD
QLWFCILFSIKPLSAIAWYLDGGWIATMMARGNEAYYLTHNISHTGGVFL
YMWNETTWIWTDNHLTAMLLLGHLIWFVSFALWFKDRGSRAEGGDIQSRW
VRLMGKRLGIKTLQEVRFPVSNLATAKLWGTVFFYTGTFVLVFLYFADGF
FQNR
Ligand information
Ligand IDBCL
InChIInChI=1S/C55H75N4O6.Mg/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3;/h25,27-32,34-35,39-40,51H,13-24,26H2,1-12H3,(H-,56,57,58,59,60,62);/q-1;+2/p-1/b33-25+;/t31-,32-,34-,35+,39-,40+,51-;/m1./s1
InChIKeyDSJXIQQMORJERS-AGGZHOMASA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC[C@@H]1[C@H](C2=CC3=C(C(=C4[N-]3[Mg+2]56[N]2=C1C=C7[N-]5C8=C([C@H](C(=O)C8=C7C)C(=O)OC)C9=[N]6C(=C4)[C@H]([C@@H]9CCC(=O)OC/C=C(\C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)C)C(=O)C)C
CACTVS 3.385[Mg++].CC[CH]1[CH](C)C2=Cc3[n-]c(C=C4N=C([CH](CCC(=O)OCC=C(C)CCC[CH](C)CCC[CH](C)CCCC(C)C)[CH]4C)C5=C6[N-]C(=CC1=N2)C(=C6C(=O)[CH]5C(=O)OC)C)c(C)c3C(C)=O
CACTVS 3.385[Mg++].CC[C@@H]1[C@@H](C)C2=Cc3[n-]c(C=C4N=C([C@@H](CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)[C@@H]4C)C5=C6[N-]C(=CC1=N2)C(=C6C(=O)[C@@H]5C(=O)OC)C)c(C)c3C(C)=O
OpenEye OEToolkits 2.0.7CCC1C(C2=CC3=C(C(=C4[N-]3[Mg+2]56[N]2=C1C=C7[N-]5C8=C(C(C(=O)C8=C7C)C(=O)OC)C9=[N]6C(=C4)C(C9CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C)C(=O)C)C
FormulaC55 H74 Mg N4 O6
NameBACTERIOCHLOROPHYLL A
ChEMBL
DrugBankDB01853
ZINC
PDB chain7vzg Chain A Residue 909 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vzg Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c.
Resolution2.61 Å
Binding residue
(original residue number in PDB)		L38 S315 N361 H362 V365
Binding residue
(residue number reindexed from 1)		L27 S304 N350 H351 V354
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7vzg, PDBe:7vzg, PDBj:7vzg
PDBsum7vzg
PubMed36517472
UniProtG2LDR8

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