Structure of PDB 7o0u Chain M Binding Site BS08

Receptor Information
>7o0u Chain M (length=323) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLEYQNLFTRVQVRTVPEPGIFSYLAGKFGDAQIGPIYLGWAGVLSLIFG
FIAIEIIGLNMWASVGWDPVEFIRQLPWLALEPPPPQYGLRVPPLNQGGW
YLMAGFFLTVSIILWWIRIYRRARALQMGSHLPWAFASAIFLYSTFFFQP
LLVGSWSEMVPFGIFPHLDWTSAFSIRYGNLYYNPFHALSIAFLYGSAVL
FAMHGATILAVARMGGEREIEQITDRGTAAERSMLFWRWCMGFNATMESI
HRWAWWFAVLTTFTGGIGILLTGTVVDNWYLWGVKHGLVAPYPAQNQLTP
EQQDLLRGRYQGTAPDSFPSYVV
Ligand information
Ligand IDCRT
InChIInChI=1S/C42H60O2/c1-35(23-15-25-37(3)27-17-29-39(5)31-19-33-41(7,8)43-11)21-13-14-22-36(2)24-16-26-38(4)28-18-30-40(6)32-20-34-42(9,10)44-12/h13-32H,33-34H2,1-12H3/b14-13-,23-15+,24-16+,27-17+,28-18+,31-19+,32-20+,35-21+,36-22+,37-25+,38-26+,39-29+,40-30+
InChIKeyVAZQBTJCYODOSV-RISZBRKMSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O(C)C(C)(C)C/C=C/C(=C/C=C/C(=C/C=C/C(=C/C=C\C=C(\C=C\C=C(\C=C\C=C(\C=C\CC(OC)(C)C)C)C)C)C)C)C
OpenEye OEToolkits 1.5.0CC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)C=CCC(C)(C)OC)C)C)C=CCC(C)(C)OC
OpenEye OEToolkits 1.5.0C/C(=C\C=C\C(=C\C=C\C(=C\C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/C=C/CC(C)(C)OC)\C)\C)/C=CCC(C)(C)OC
CACTVS 3.341COC(C)(C)C\C=C\C(C)=C\C=C\C(C)=C\C=C\C(C)=C\C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(C)/C=C/CC(C)(C)OC
CACTVS 3.341COC(C)(C)CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)C=CCC(C)(C)OC
FormulaC42 H60 O2
NameSPIRILLOXANTHIN;
RHODOVIOLASCIN
ChEMBL
DrugBank
ZINCZINC000064426309
PDB chain7o0u Chain M Residue 405 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7o0u 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
Resolution2.35 Å
Binding residue
(original residue number in PDB)		E69 G72 M75 G119 F120 T123 Y157 F161 M173 V174 F176 G177 H181
Binding residue
(residue number reindexed from 1)		E55 G58 M61 G105 F106 T109 Y143 F147 M159 V160 F162 G163 H167
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 05:51:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7o0u', asym_id = 'M', bs = 'BS08', title = '2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7o0u', asym_id='M', bs='BS08', title='2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009772,0019684,0030077,0045156', uniprot = '', pdbid = '7o0u', asym_id = 'M'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009772,0019684,0030077,0045156', uniprot='', pdbid='7o0u', asym_id='M')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>