Structure of PDB 6z5r Chain M Binding Site BS08

Receptor Information
>6z5r Chain M (length=306) Species: 258594 (Rhodopseudomonas palustris CGA009) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AQYQNIFTQVQVEGPAYAGVPLRPGSSPRETQTTFNYWLGKIGDAQVGPV
YLGFTGVCSLLCGFVAIEIIGLNMLASVDWSPIEFLRQFCWLALEPPKPE
YGLTIPPLKEGGWWLMAGFFLTVSIALWWVRTYRRSRALGMGTHVSWAFA
SAILLYLALGFIQPLLMGSWSEAPPFGVFPHLDWTNNFSIKYGNLYYNPF
HCLSIAFLYGSALLFAMHGATILAVSRYGGEREIEQMLDRGTALERAALF
WRWTMGFNATAESIHRWAWWFAVLCPLTGAIGIILTGPVVDNWFDWGVKH
GLAPPR
Ligand information
Ligand IDQAK
InChIInChI=1S/C40H78O/c1-33(2)19-13-22-36(5)25-16-28-37(6)26-14-23-34(3)20-11-12-21-35(4)24-15-27-38(7)29-17-30-39(8)31-18-32-40(9,10)41/h13,16,22,28,33-39,41H,11-12,14-15,17-21,23-27,29-32H2,1-10H3/b22-13+,28-16+/t34-,35-,36-,37+,38+,39-/m1/s1
InChIKeyNKXXNXZGYNRQNV-BTRAWPHCSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)CC=C[CH](C)CC=C[CH](C)CCC[CH](C)CCCC[CH](C)CCC[CH](C)CCC[CH](C)CCCC(C)(C)O
OpenEye OEToolkits 2.0.7C[C@H](CCCC[C@@H](C)CCC[C@H](C)/C=C/C[C@H](C)/C=C/CC(C)C)CCC[C@H](C)CCC[C@@H](C)CCCC(C)(C)O
OpenEye OEToolkits 2.0.7CC(C)CC=CC(C)CC=CC(C)CCCC(C)CCCCC(C)CCCC(C)CCCC(C)CCCC(C)(C)O
CACTVS 3.385CC(C)C\C=C\[C@@H](C)C\C=C\[C@@H](C)CCC[C@H](C)CCCC[C@@H](C)CCC[C@H](C)CCC[C@@H](C)CCCC(C)(C)O
FormulaC40 H78 O
Name(6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol
ChEMBL
DrugBank
ZINC
PDB chain6z5r Chain M Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z5r Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		I68 E69 G72 G119 F120 Y157 G161 F177 G178 H182
Binding residue
(residue number reindexed from 1)		I67 E68 G71 G118 F119 Y156 G160 F176 G177 H181
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex
GO:0042717 plasma membrane-derived chromatophore membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6z5r, PDBe:6z5r, PDBj:6z5r
PDBsum6z5r
PubMed33523887
UniProtA0A4Z7

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