Structure of PDB 8wdv Chain L Binding Site BS08

Receptor Information
>8wdv Chain L (length=277) Species: 572477 (Allochromatium vinosum DSM 180) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVAGFFFALLGVLLIV
WGATIGPNAELQTYNIWQISIAPPDLSYGLGMAPMTEGGLWQIITICAIG
AFVSWALREVEICRKLGIGFHIPFAFAFAIGAYLVLVVVRPILMGAWGHG
FPYGILSHLDWVSNVGYQFLHFHYNPAHMLAITFFFTNCLALSMHGSLIL
SVTNPQKGEEVKTSEHENTFFRDIVGYSIGALAIHRLGLFLALSAVFWSA
VCIVISGPFWTRGWPEWWNWWLELPLW
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain8wdv Chain M Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8wdv High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum
Resolution2.24 Å
Binding residue
(original residue number in PDB)		H196 H236
Binding residue
(residue number reindexed from 1)		H195 H235
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex
GO:0042717 plasma membrane-derived chromatophore membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8wdv, PDBe:8wdv, PDBj:8wdv
PDBsum8wdv
PubMed38347078
UniProtP51762|RCEL_ALLVD Reaction center protein L chain (Gene Name=pufL)

[Back to BioLiP]