Structure of PDB 7eqd Chain L Binding Site BS08

Receptor Information
>7eqd Chain L (length=275) Species: 1085 (Rhodospirillum rubrum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVTTLLFTVLGTALIV
WGAALGPSWTFWQISINPPDVSYGLAMAPMAKGGLWQIITFSAIGAFVSW
ALREVEICRKLGIGYHIPFAFGFAILAYVSLVVIRPVMMGAWGYGFPYGF
MTHLDWVSNTGYQYANFHYNPAHMLGITLFFTTCLALALHGSLILSAANP
GKGEVVKGPEHENTYFQDTIGYSVGTLGIHRVGLILALSAVVWSIICMIL
SGPIYTGSWPDWWLWWQKLPFWNHG
Ligand information
Ligand ID08I
InChIInChI=1S/C55H66N4O6/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3/h17,19,21,25,27-29,51,56,58H,13-16,18,20,22-24,26H2,1-12H3/b31-19+,32-21+,33-25+,41-29-,42-27-,43-27-,44-28-,45-28-,46-29-,52-50-/t51-/m1/s1
InChIKeyHZSDVJXREXKBMW-FAWFAMGLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCc1c(c2/cc/3\nc(/cc\4/c(c(/c(/[nH]4)c\5/c6n/c(c\c1[nH]2)/C(=C6C(=O)[C@@H]5C(=O)OC)C)CCC(=O)OC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CCC=C(C)C)C)C(=C3C(=O)C)C)C
CACTVS 3.385CCc1c(C)c2[nH]c1cc3nc4c([CH](C(=O)OC)C(=O)c4c3C)c5[nH]c(cc6nc(c2)c(C(C)=O)c6C)c(C)c5CCC(=O)OCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C
OpenEye OEToolkits 2.0.7CCc1c(c2cc3nc(cc4c(c(c([nH]4)c5c6nc(cc1[nH]2)C(=C6C(=O)C5C(=O)OC)C)CCC(=O)OCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C)C)C(=C3C(=O)C)C)C
CACTVS 3.385CCc1c(C)c2[nH]c1cc3nc4c([C@@H](C(=O)OC)C(=O)c4c3C)c5[nH]c(cc6nc(c2)c(C(C)=O)c6C)c(C)c5CCC(=O)OC\C=C(/C)CC\C=C(C)\CC\C=C(/C)CCC=C(C)C
FormulaC55 H66 N4 O6
NameTrans-Geranyl BACTERIOPHEOPHYTIN A
ChEMBL
DrugBank
ZINC
PDB chain7eqd Chain M Residue 405 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7eqd Cryo-EM Structure of the Photosynthetic LH1-RC Complex from Rhodospirillum rubrum .
Resolution2.76 Å
Binding residue
(original residue number in PDB)		F182 L186 L190 I221
Binding residue
(residue number reindexed from 1)		F181 L185 L189 I220
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex
GO:0042717 plasma membrane-derived chromatophore membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7eqd, PDBe:7eqd, PDBj:7eqd
PDBsum7eqd
PubMed34323477
UniProtP10717|RCEL_RHORU Reaction center protein L chain (Gene Name=pufL)

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