Structure of PDB 6m0p Chain C Binding Site BS08

Receptor Information

>6m0p Chain C (length=503) Species: 915 (Nitrosomonas europaea)

DISTVPDETYDALKLDRGKATPKETYEALVKRYKDPAHGAGKGTMGDYWE
PIAISIYMDPNTFYKPPVSPKEVAERKDCVECHSDETPVWVRAWKRSTHA
NLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHV
DVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAG
RPSHALDYTANIETTVWAAMPQREVAEGCTMCHTNQNKCDNCHTRHEFSA
AESRKPEACATCHSGVDHNNWEAYTMSKHGKLAEMNRDKWNWEVRLKDAF
SKGGQNAPTCAACHMEYEGEYTHNITRKTRWANYPFVPGIAENITSDWSE
ARLDSWVLTCTQCHSERFARSYLDLMDKGTLEGLAKYQEANAIVHKMYED
GTLTGQKTNRPNPPEPEKPGFGIFTQLFWSKGNNPASLELKVLEMAENNL
AKMHVGLAHVNPGGWTYTEGWGPMNRAYVEIQDEYTKMQELSALQARVNK
LEG

Ligand information

• Ligand ID: HEC
• InChI: InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,9-12H2,1-6H3,(H,39,40)(H,41,42);/q-4;+4/b21-7?,22-8?,26-13-,29-14-,30-15-,31-16-;
• InChIKey: HXQIYSLZKNYNMH-LJNAALQVSA-N
• SMILES:
  ACDLabs 10.04: O=C(O)CCC1=C(C2=CC6=C(C(=C/C)\C5=CC4=C(C(\C3=Cc7c(c(c8C=C1N2[Fe](N34)(N56)n78)CCC(=O)O)C)=C/C)C)C)C
  OpenEye OEToolkits 1.5.0: CC=C1C(=C2C=C3C(=CC)C(=C4N3[Fe]56N2C1=Cc7n5c(c(c7C)CCC(=O)O)C=C8N6C(=C4)C(=C8CCC(=O)O)C)C)C
  CACTVS 3.341: C\C=C1/C(=C2C=C3N4C(=Cc5n6c(C=C7N8C(=C(C)\C7=C/C)C=C1N2[Fe@@]468)c(C)c5CCC(O)=O)C(=C3C)CCC(O)=O)C
  CACTVS 3.341: CC=C1C(=C2C=C3N4C(=Cc5n6c(C=C7N8C(=C(C)C7=CC)C=C1N2[Fe]468)c(C)c5CCC(O)=O)C(=C3C)CCC(O)=O)C
• Formula: C34 H34 Fe N4 O4
• Name: HEME C
• PDB chain: 6m0p Chain C Residue 606

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6m0p Enhancement of the activity of hydroxylamine oxidoreductase by juglone, plant secondary metabolite.
• Resolution: 2.78 Å
• Binding residue (original residue number in PDB): P226 S227 H228 D231 C256 H257 N259 N265 C283 C286 H287 C334 I349 T353 A356
• Binding residue (residue number reindexed from 1): P202 S203 H204 D207 C232 H233 N235 N241 C259 C262 H263 C310 I325 T329 A332
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): H257 D291 H292 Y358 Y491
• Catalytic site (residue number reindexed from 1): H233 D267 H268 Y334 Y467
• Enzyme Commision number: 1.7.2.6: hydroxylamine dehydrogenase.
  1.7.2.9: hydroxylamine oxidase.

External links

• PDB: RCSB:6m0p, PDBe:6m0p, PDBj:6m0p
• PDBsum: 6m0p
• PubMed: 38009977
• UniProt: Q50925|HAO_NITEU Hydroxylamine oxidoreductase (Gene Name=hao1)