Structure of PDB 8agd Chain B Binding Site BS08

Receptor Information
>8agd Chain B (length=1111) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VSRGVILGYPDGTFRGTQNLTRYEAAIIIARLLDQMRDGETPAGMTAEDM
TALQNAIQELAADLAALGVRVSDLEANAVSKDDFARLEARIEEVAAAGGE
QGATEALQGRVDEYDALRADVDDNASSIAALNDLTVLLNQDILDLQDRVS
AVEAAQADFVQRSDFDALGGRVTTVETRVETVNNSLTGRIAALERNAFSV
KPSLTIGYSVSRTSRNFDVDRLFPLNADGTVANNAFTSGGIDTDTGAQRR
DFGDFGNASDPVVAGAAGLYGFADGVSYTVYFTDGSTATFDGLNPADYKV
PTGKVIDTTKGRNGFGFNNLARYKEGSTDIGISLGFDTSGQFSQVTSGTG
GSLFSTAGRLQVNQIDLNFGLVTGLPSDAYVDTNGNGKKDDGEATGRGTY
LGSGGTAAILRDPAGNVYRPVFFRFKNATTQFSVGNNPVIVTLGQQQKFY
FSDYVFDNNYDGRGDGFTVTVDGSNVPVIGAWKPQIKGVYGSRSGLDGTA
EAGYGVYYRGVRAQITPVGTLTAGIHYAQEGRDMFGAAQNTTSTPSDVTT
YGADLHGKAFGVELHSEYATSRVRPNTANAAVQTSNAFYARVATRKDNLA
FDLNTPAAKFGNDTFGVSLYDLNYRKIDAGYNNVAGISEYGYGSYSRTSA
QNIAYNPDTGVTAPFANLDRQAYTDANNDGTSDRNADGTVVATNTKIGQM
GFGVKAAANLGPVAIGGYYDTSTGANGDNANRMTEAGGSAKVAYSIFSLR
GTYNTLDSNRPQIYRDAAGTQIIGDAKVRRYAVQADVTPGLGLFVGAYYR
DVNVNGVRSTTDRGLLGRGYLASSFEPGVGNNAYRTGLRCADNNFGTGTR
DIDGVGGVLNPAVNLDQSRTATCFTSYGVEAGHAGDNANALVKDLFFRVG
YSRVYVPTTATATTGDFSGSVTYGDARYDRKVGVANVRLAGSFSTTNTQL
DSRPAGTRGAVGLIVRTDPLENVPFRPQFNGQVGYYTADNRVAAGNYNAN
ATKYGAGVVLNDFLLPQTKIGVRYDGYMAQNRQYTPFDGDGTQGYFSDAN
NNRRTNLNGVYVEGAYQDLIFSYGTYTLSQKDLNGVEYGSGINNGQPARG
QTFKISYKVNF
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain8agd Chain B Residue 1308 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8agd The SDBC is active in quenching oxidative conditions and bridges the cell envelope layers in Deinococcus radiodurans.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		D438 N440 N442 K444 D446 E449
Binding residue
(residue number reindexed from 1)		D382 N384 N386 K388 D390 E393
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8agd, PDBe:8agd, PDBj:8agd
PDBsum8agd
PubMed36502921
UniProtQ9RRB6|SLPA_DEIRA Outer membrane protein SlpA (Gene Name=slpA)

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