Structure of PDB 5vk3 Chain B Binding Site BS08

Receptor Information
>5vk3 Chain B (length=794) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TEWTVDKIASALSVLAEEVPQNHSRLVNFLLEETEKRAPQPRHLSKTDPF
AHMKSKAIDEGVPTMDVKFKQHSGEYGKSRNSGRRFQYPVVCIKPDREPV
PPYRFHHAEIRKNILALNSQLNFVPPRSQKIAKRAQAEYAATLAPYLEPW
LRKLNIEGCTKSNLIRFMASQPESDDSMTPQQKSNLLDTYSDDMGSPQAV
RNASMFTEAWDRVFNDQSKLRRVALRDILMLDKNVEPIFDNKRAKALMQK
VIDALGSYTTLGCLICFSHDCEHGEIERDNQKRCFSLEEIGGLMPSLRRK
WAAQIEQRQHPPCRNECYRIHGPPWSENEVGTLEWMFATIGYSQTLRPEC
FVGAILGRPCWDVHRKLQELDLRLPPVEPRTIPKQKSLPWYDRRKKQLMS
DWADATITHEHAVRELFAPCHHDGPCTAANGCPCASAGTHPVLCERFCLC
TAEECPLKFTGCACHSSGKTCLQRQREGRPCICVQLNRECDPTLCKGCGA
RERADPENAYDEVLHSTGCQNVALQRGAAKAVVLGKSQLEACGYGLFAAE
DIEEGEFVIEYTGELISHDEGVRRAHRRGDVVSYLFTLLEQEGIWVDAAI
YGNLSRYINHATDGNIMPKIMYVNHEWRIKFTAIKDIKAGEELFFNYGDN
FPNLTKKRPLLVPKTTQPLFDPLSKVQLLPGQPLPQHPIDDSWLLLKHRD
NLQDFIDLRPEEKEFLQEWDAFILRRHISSEQYLPRYFLRFVREKADWLV
SKRSRGEEFSKLVATLLARRVLPERVVIEATQVLNDARGRLREQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5vk3 Chain B Residue 8008 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vk3 Polycomb repressive complex 2 in an autoinhibited state.
Resolution2.114 Å
Binding residue
(original residue number in PDB)		C570 C574 C615 C625
Binding residue
(residue number reindexed from 1)		C313 C317 C350 C360
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) Y826 Y918
Catalytic site (residue number reindexed from 1) Y561 Y647
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042054 histone methyltransferase activity
Biological Process
GO:0006338 chromatin remodeling

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Molecular Function
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Biological Process
External links
PDB RCSB:5vk3, PDBe:5vk3, PDBj:5vk3
PDBsum5vk3
PubMed28607149
UniProtG0RYC6;
G0SDW4

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