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Structure of PDB 3k8l Chain B Binding Site BS08

Receptor Information

>3k8l Chain B (length=646) Species: 818 (Bacteroides thetaiotaomicron)

WTALTASPDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLN
QLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG
IKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIA
MITQEGAAGYNAAEWFQVSDETAAVKGLLKFTLDWSNAPSPILVVSTGTK
ADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRT
SNASFWPSGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHS
HFCTDWFADLNYGPVDQAGESPAYQAIADAAKGWIARGVDGLRLDAVKHI
YHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEYDKVAPYY
KGLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATK
LSNHNEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDN
GDEYVRSPMLWGDSYTTNYTDKTDATVSKNVKTVADQQADTHSLLNIYFS
LTRLRNTYPALAEGNMTKHSVYNESQEKDYKPIAAWYMTKDNEKLLVIHN
FGGTAMQLPLTDKIEKVLFVNGETQQNTDSYTLKLGGYASVVFKLG

IndexError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 09:10:02 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3k8l', asym_id = 'B', bs = 'BS08', title = 'SusG: A Unique Cell-Membrane-Associated alpha-Am...an Gut Symbiont Targets Complex Starch Molecules.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3k8l', asym_id='B', bs='BS08', title='SusG: A Unique Cell-Membrane-Associated alpha-Am...an Gut Symbiont Targets Complex Starch Molecules.')

    925                 p=subprocess.Popen(cmd,shell=True,stdout=subprocess.PIPE)

    926                 stdout,stderr=p.communicate()

=>  927                 line     =stdout.decode().splitlines()[0]

    928                 items    =line.split('\t')

    929                 rhea     ='\n'.join(["RHEA:"+r for r in items[2].split(',')])

line = '3k8l\tB\tGLC\t5', stdout = b'', stdout.decode = <built-in method decode of bytes object>, ).splitlines undefined

IndexError: list index out of range
      args = ('list index out of range',)
      with_traceback = <built-in method with_traceback of IndexError object>