Structure of PDB 8acq Chain A Binding Site BS08

Receptor Information
>8acq Chain A (length=949) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDFDALGGRVTTVETRVETVNNSLTGRIAALERNAFSVKPSLTIGYSVSR
TSRNFDVDRLFPLNADGTVANNAFTSGGIDTDTGAQRRDFGDFGNASDPV
VAGAAGLYGFADGVSYTVYFTDGSTATFDGLNPADYKVPTGKVIDTTKGR
NGFGFNNLARYKEGSTDIGISLGFDTSGQFSQVTSGTGGSLFSTAGRLQV
NQIDLNFGLVTGLPSDAYVDTNGNGKKDDGEATGRGTYLGSGGTAAILRD
PAGNVYRPVFFRFKNATTQFSVGNNPVIVTLGQQQKFYFSDYVFDNNYDG
RGDGFTVTVDGSNVPVIGAWKPQIKGVYGSRSGLDGTAEAGYGVYYRGVR
AQITPVGTLTAGIHYAQEGRDMFGAAQNTTSTPSDVTTYGADLHGKAFGV
ELHSEYATSRVRPNTANAAVQTSNAFYARVATRKDNLAFDLNTPAAKFGN
DTFGVSLYDLNYRKIDAGYNNVAGISEYGYGSYSRTSAQNIAYNPDTGVT
APFANLDRQAYTDANNDGTSDRNADGTVVATNTKIGQMGFGVKAAANLGP
VAIGGYYDTSTGANGDNANRMTEAGGSAKVAYSIFSLRGTYNTLDSNRPQ
IYRDAAGTQIIGDAKVRRYAVQADVTPGLGLFVGAYYRDVNVNGVRSTTD
RGLLGRGYLASSFEPGVGNNAYRTGLRCADNNFGTGTRDIDGVGGVLNPA
VNLDQSRTATCFTSYGVEAGHAGDNANALVKDLFFRVGYSRVYVPTTATA
TTGDFSGSVTYGDARYDRKVGVANVRLAGSFSTTNTQLDSRPAGTRGAVG
LIVRTDPLENVPFRPQFNGQVGYYTADNRVAAGNYNANATKYGAGVVLND
FLLPQTKIGVRYDGYMAQNRQYTPFDGDGTQGYFSDANNNRRTNLNGVYV
EGAYQDLIFSYGTYTLSQKDLNGVEYGSGINNGQPARGQTFKISYKVNF
Ligand information
Ligand IDJPX
InChIInChI=1S/C48H91N2O15P/c1-5-9-12-15-17-18-19-20-21-22-24-27-30-33-49-47(57)40(37-61-48-44(50-41(52)8-4)46(56)45(55)39(34-51)64-48)65-66(58,59)62-36-38(63-43(54)32-29-25-14-11-7-3)35-60-42(53)31-28-26-23-16-13-10-6-2/h38-40,44-46,48,51,55-56H,5-37H2,1-4H3,(H,49,57)(H,50,52)(H,58,59)/t38-,39-,40-,44-,45+,46-,48-/m0/s1
InChIKeyBORXCJRMZBMSCX-GUINJWSRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCNC(=O)C(COC1C(C(C(C(O1)CO)O)O)NC(=O)CC)OP(=O)(O)OCC(COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCNC(=O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(=O)CC)O[P](O)(=O)OC[CH](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCNC(=O)[C@H](CO[C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)CO)O)O)NC(=O)CC)OP(=O)(O)OC[C@H](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCNC(=O)[C@H](CO[C@H]1O[C@@H](CO)[C@@H](O)[C@@H](O)[C@@H]1NC(=O)CC)O[P](O)(=O)OC[C@H](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
FormulaC48 H91 N2 O15 P
Name[(2~{S})-3-[[(2~{S})-3-[(2~{S},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3-(propanoylamino)oxan-2-yl]oxy-1-oxidanylidene-1-(pentadecylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-2-octanoyloxy-propyl] decanoate
ChEMBL
DrugBank
ZINC
PDB chain8acq Chain B Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8acq The SDBC is active in quenching oxidative conditions and bridges the cell envelope layers in Deinococcus radiodurans.
Resolution2.54 Å
Binding residue
(original residue number in PDB)
R268 G1120 Y1129 F1159
Binding residue
(residue number reindexed from 1)
R50 G902 Y911 F941
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8acq, PDBe:8acq, PDBj:8acq
PDBsum8acq
PubMed36502921
UniProtQ9RRB6|SLPA_DEIRA Outer membrane protein SlpA (Gene Name=slpA)

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