Structure of PDB 6vg1 Chain A Binding Site BS08

Receptor Information
>6vg1 Chain A (length=642) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTVRYRTYEEDEPGTVIGTLAEDLHLEGEGSFRLMKQFNNSLIHVRESDG
QLSIGERIDRERICRQSPHCTLALDVVSVAKEQFKLIHVEVEVRDINDNS
PRFPGAEIPVEVSESAPVGTRIPLDIATDEDVGVNSIQSFQISENSHFSI
DVQTRADGVKYADLVLMKELDRESQSAYTLELLAMDGGSPSRSGTTMVNV
RVLDFNDNSPVFERSSVMVELMEDAPVGHLLLDLDALDPDEGANGEIVYG
FSPQVPQEVRQLFKIDAKSGRLTLEGQVDFETKQTYEFDAQAQDMALNPL
TATCKVIVRVIDVNDNAPVIGITPLTSISAGVAYITEAAARESFVALIST
TDRDSGQNGQVHCTLYGHEHFRLQQAYEDSYMIVTTSALDREKIAEYNLT
VVAEDLGSPPFKTVKQYTIRVSDENDNAPVFAKPVYEVSVLENNAPGAYI
TTVVARDPDFGHNGKVIYRLVETEVMGAPITTYVSLDPATGAVYALRTFN
HEILQQLDLRIQASDGGSPQLTSSAIIKVKIVDQNDNAPVIVQPALSNGS
AEVVVPSRAPHGFLVTHIKAKDADEGVNAELTYSIADEGRNVFTINKATG
EVFLVADVSEAIGQVFRATVSVSDSGRPPLSSTATITFLVTH
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6vg1 Chain A Residue 713 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6vg1 Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		E223 E281 D312 V313 D315 D354
Binding residue
(residue number reindexed from 1)		E223 E281 D312 V313 D315 D354
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6vg1, PDBe:6vg1, PDBj:6vg1
PDBsum6vg1
PubMed32101743
UniProtQ6GLU2

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