Structure of PDB 6m4m Chain A Binding Site BS08

Receptor Information
>6m4m Chain A (length=496) Species: 6396 (Eisenia fetida) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FQYFGSYYCQPGRDVIVHLFEWKWTDIERECQWLADHNYCGVQVSPPNEH
RIVTDPPYPWWQRYQPVSYTMNSRSGSETQFRNMVTTCNNLGVYIYVDGV
LNHMTGGGSGTGSDGNSFDGDSLQYPGVPYGPNDFHGSDDCSTSDGEIHD
YNNPTEVRNCRLSGLRDLDGSANYVRDVEAEFANRLIGWGVAGFRLDACK
HMWPGDLEAILGRLNQLNTQWFPAGRNAYIYQQVIDLGGEAVKATEYTYL
GRVTEFKHGQNLGNVVRKNNGQRLANLVNFGEGWGQLSGFDALVFIDNHD
NQRGHGAGGFGTILTFFEANMYKIATAFELAWDYGHVRLMSSYNWPRNIV
NGVDTNDWVGPPTNGGGDTKDVECFNGEWICEHRWREMYNMVRFHNVAIG
NPVSNWWDNGFQAIAFGRGNRGFIFINNEDFAITQTLQTGLPGGEYCDVI
SCDNNRPPCGNSGGACRATVIVNGDGTATFDVPNGENPMIAIHVFL
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain6m4m Chain C Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6m4m X-ray crystallographic structural studies of alpha-amylase I from Eisenia fetida.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		R400 W401 R402 E403
Binding residue
(residue number reindexed from 1)		R384 W385 R386 E387
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.1: alpha-amylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004556 alpha-amylase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0043169 cation binding
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005615 extracellular space

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6m4m, PDBe:6m4m, PDBj:6m4m
PDBsum6m4m
PubMed32876059
UniProtA0A173N065

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