Structure of PDB 8jjr Chain r Binding Site BS07

Receptor Information
>8jjr Chain r (length=131) Species: 2950 (Symbiodinium sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YKETPADERLFEQVYLQYTSEYMKGPMYWHKDKLQGSLPDYPGRPMIRDG
KYTPYVLGNLKSFSSNELAFLSMLFFGVGLYGNLQFNYYDPQWAKVDAGG
YFNVSYIVESLLLPISFFMHIACYIQKQNGK
Ligand information
Ligand IDDD6
InChIInChI=1S/C40H54O3/c1-29(17-13-19-31(3)21-22-36-33(5)25-34(41)26-37(36,6)7)15-11-12-16-30(2)18-14-20-32(4)23-24-40-38(8,9)27-35(42)28-39(40,10)43-40/h11-20,23-24,34-35,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23-,29-15+,30-16+,31-19+,32-20+/t34-,35+,39-,40+/m1/s1
InChIKeyOGHZCSINIMWCSB-WMTIXGNLSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01CC([C@H]=C[C@H]=C(C#CC=1C(C)(C)CC(CC=1C)O)C)=[C@H]C=[C@H]\C=C(/C)\C=C\C=C(/C)\C=C/C32OC2(CC(CC3(C)C)O)C
OpenEye OEToolkits 2.0.6CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C)C)C
CACTVS 3.385CC1=C(C#CC(\C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C/[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)C(C)(C)C[C@H](O)C1
OpenEye OEToolkits 2.0.6CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C\[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C)/C)/C
CACTVS 3.385CC1=C(C#CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)C(C)(C)C[CH](O)C1
FormulaC40 H54 O3
Name(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol;
Diadinoxanthin
ChEMBL
DrugBank
ZINC
PDB chain8jjr Chain r Residue 205 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jjr Architecture of symbiotic dinoflagellate photosystem I-light-harvesting supercomplex in Symbiodinium.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
A90 S93 M94 F97 N104 L134 F138 H141
Binding residue
(residue number reindexed from 1)
A69 S72 M73 F76 N83 L113 F117 H120
Annotation score1
External links