Structure of PDB 5dzy Chain D Binding Site BS07

Receptor Information
>5dzy Chain D (length=412) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AISYSMPEETESGYLVANLAQDLGLRVGELTTRGARIHHNGNKELLQLDA
ERGNLLLKEKPDREALCGATEPCVLHFQIILENPVQFFQTDLQFTDINDH
FPEFPDTEMLLKIQEIAQPGTVFPLKAAQDPDIGSNAVQNYTVSPNLHFH
VVTLSRSDDRKYPELVLDRALDREEQPELTLILTALDGGAPPKSGTTTVR
IEVVDINDNAPQFLQSLYAVEVPENSPLNALVVTVSARDLDAGIHGNVAY
SLFQGGGGPQPFVIDEITGEIRLKGALDFEATSYYTMEIVATDSGGLSGK
CTVAIQVLDVNDNAPKLTISSLTSSIPENAPEAVVAVFSVSDPDSGDNGR
MVCSIQNGLPFLLKPTFKNFYTLVTERPLDRESNAEYNITITVSDLGTPR
LTTQHTITVQVS
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5dzy Chain D Residue 510 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5dzy Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		E116 E175 D206 I207 D209 D242
Binding residue
(residue number reindexed from 1)		E115 E174 D205 I206 D208 D241
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5dzy, PDBe:5dzy, PDBj:5dzy
PDBsum5dzy
PubMed27161523
UniProtQ91XZ2|PCDB8_MOUSE Protocadherin beta-8 (Gene Name=Pcdhb8)

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