Structure of PDB 8pqo Chain C Binding Site BS07

Receptor Information
>8pqo Chain C (length=251) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKD
GEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYRTVITNEY
MKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSK
DYKAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKW
WGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKR
Q
Ligand information
Ligand IDFH6
InChIInChI=1S/C8H14N2O2S/c1-5-7(2-8(12)10-5)13-4-6(9)3-11/h3,5-7H,2,4,9H2,1H3,(H,10,12)/t5-,6+,7+/m0/s1
InChIKeyDSBMZROJCWDNEG-RRKCRQDMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H]1[C@@H](CC(=O)N1)SC[C@@H](C=O)N
CACTVS 3.385C[C@@H]1NC(=O)C[C@H]1SC[C@H](N)C=O
OpenEye OEToolkits 2.0.7CC1C(CC(=O)N1)SCC(C=O)N
CACTVS 3.385C[CH]1NC(=O)C[CH]1SC[CH](N)C=O
FormulaC8 H14 N2 O2 S
Name(2~{R})-2-azanyl-3-[(2~{S},3~{R})-2-methyl-5-oxidanylidene-pyrrolidin-3-yl]sulfanyl-propanal
ChEMBL
DrugBank
ZINC
PDB chain8pqo Chain C Residue 311 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8pqo Non-vesicular phosphatidylinositol transfer plays critical roles in defining organelle lipid composition.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		W88 Y93 R94 E111 T112 H114
Binding residue
(residue number reindexed from 1)		W87 Y92 R93 E110 T111 H113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:56:55 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8pqo', asym_id = 'C', bs = 'BS07', title = 'Non-vesicular phosphatidylinositol transfer play...al roles in defining organelle lipid composition.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8pqo', asym_id='C', bs='BS07', title='Non-vesicular phosphatidylinositol transfer play...al roles in defining organelle lipid composition.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0005548,0015914', uniprot = '', pdbid = '8pqo', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005548,0015914', uniprot='', pdbid='8pqo', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>