Structure of PDB 6vfu Chain C Binding Site BS07
Receptor Information
>6vfu Chain C (length=428) Species:
9606
(Homo sapiens) [
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LINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPHL
VDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKD
LNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPN
ELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPRLGT
VGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTNG
QVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDL
GPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALV
RVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNL
TIQARDGGVPMLQSAKSFTVLITDHHHH
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
6vfu Chain C Residue 507 [
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Receptor-Ligand Complex Structure
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PDB
6vfu
Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.
Resolution
3.5 Å
Binding residue
(original residue number in PDB)
E228 E286 D317 T318 D320 D356
Binding residue
(residue number reindexed from 1)
E228 E286 D317 T318 D320 D356
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005509
calcium ion binding
Biological Process
GO:0007155
cell adhesion
GO:0007156
homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886
plasma membrane
GO:0016020
membrane
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6vfu
,
PDBe:6vfu
,
PDBj:6vfu
PDBsum
6vfu
PubMed
32101743
UniProt
Q8TAB3
|PCD19_HUMAN Protocadherin-19 (Gene Name=PCDH19)
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